1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcttaccgcaaaattaccaaatatccactcattctatttaattaggtcacgcattgcttaaaagatttccaatagtggtagtccttatccatattttcagGAGAGAAGATATCACCAATCGAAGTGGATGCTGTCCTTTTATCACATCCAGACATTGCTCAAGCGGTTGCTTTTGGGGTTCCAGATGACAAATACGGCGA
species | Vitis vinifera |
transcript | Vv16s0050g00390.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGTTATTTGCATCTTGTTGGTCGAATCAAGGAACTCATCAACCGTGGAG GAGAGAAGATATCACCAATTGAAGTGGATGCTGTCCTTTTATCACATCCAGEST: gi|110373141|gb|EC937354.1|EC937354
genomic: TGGTTATTTGCATCTTGTTGGTCGAATCAAGGAACTCATCAACCGTGGAGgtaatgtttc ... atattttcagGAGAGAAGATATCACCAATCGAAGTGGATGCTGTCCTTTTATCACATCCAG
EST: TGGTTATTTGCATCTTGTTGGTCGAATCAAGGAACTCATCAACCGTGGAG GAGAGAAGATATCACCAATCGAAGTGGATGCTGTCCTTTTATCACATCCAGEST: gi|110383709|gb|EC948098.1|EC948098
genomic: TGGTTATTTGCATCTTGTTGGTCGAATCAAGGAACTCATCAACCGTGGAGgtaatgtttc ... atattttcagGAGAGAAGATATCACCAATCGAAGTGGATGCTGTCCTTTTATCACATCCAG
EST: TGGTTATTTGCATCTTGTTGGTCGAATCAAGGAACTCATCAACCGTGGAG GAGAGAAGATATCACCAATCGAAGTGGATGCTGTCCTTTTATCACATCCAGEST: gi|110407659|gb|EC973268.1|EC973268
genomic: TGGTTATTTGCATCTTGTTGGTCGAATCAAGGAACTCATCAACCGTGGAGgtaatgtttc ... atattttcagGAGAGAAGATATCACCAATCGAAGTGGATGCTGTCCTTTTATCACATCCAG
EST: TGGTTATTTGCATCTTGTTGGTCGAATCAAGGAACTCATCAACCGTGGAG GAGAGAAGATATCACCAATTGAAGTGGATGCTGTCCTTTTATCACATCCAGEST: gi|110371806|gb|EC935930.1|EC935930
genomic: TGGTTATTTGCATCTTGTTGGTCGAATCAAGGAACTCATCAACCGTGGAGgtaatgtttc ... atattttcagGAGAGAAGATATCACCAATCGAAGTGGATGCTGTCCTTTTATCACATCCAG
EST: TGGTTATTTGCATCTTGTTGGTCGAATCAAGGAACTCATCAACCGTGGAG GAGAGAAGATATCACCAATCGAAGTGGATGCTGTCCTTTTATCACATCCAGEST: gi|30329927|gb|CD013189.1|CD013189
genomic: TGGTTATTTGCATCTTGTTGGTCGAATCAAGGAACTCATCAACCGTGGAGgtaatgtttc ... atattttcagGAGAGAAGATATCACCAATCGAAGTGGATGCTGTCCTTTTATCACATCCAG
EST: TGGTTATTTGCATCTTGTTGGTCGAATCAAGGAACTCATCAACCGTGGAG GAGAGAAGATATCACCAATTGAAGTGGATGCTGTCCTTTTATCACATCCAGEST: gi|83275734|gb|DV939742.1|DV939742
genomic: TGGTTATTTGCATCTTGTTGGTCGAATCAAGGAACTCATCAACCGTGGAGgtaatgtttc ... atattttcagGAGAGAAGATATCACCAATCGAAGTGGATGCTGTCCTTTTATCACATCCAG
EST: TGGTTATTTGCATCTTGTTGGTCGAATCAAGGAACTCATCAACCGTGGAG GAGAGAAGATATCACCAATCGAAGTGGATGCTGTCCTTTTATCACATCCAGEST: gi|110714911|gb|EE092360.1|EE092360
genomic: TGGTTATTTGCATCTTGTTGGTCGAATCAAGGAACTCATCAACCGTGGAGgtaatgtttc ... atattttcagGAGAGAAGATATCACCAATCGAAGTGGATGCTGTCCTTTTATCACATCCAG
EST: GAACTCATCAACCGTGGAG GAGAGAAGATATCACCAATCGAAGTGGATGCTGTCCTTTTATCACATCCAGEST: gi|27586211|gb|CB008906.1|CB008906
genomic: GAACTCATCAACCGTGGAGgtaatgtttc ... atattttcagGAGAGAAGATATCACCAATCGAAGTGGATGCTGTCCTTTTATCACATCCAG
EST: TGGTTATTTGCATCTTGTTGGTCGAATCAAGGAACTCATCAACCGTGGAG GAGAGAAGAT-TCACCAATTGAAGTGGATGCTGTCCTTTTATCACATCCAG
genomic: TGGTTATTTGCATCTTGTTGGTCGAATCAAGGAACTCATCAACCGTGGAGgtaatgtttc ... atattttcagGAGAGAAGATATCACCAATCGAAGTGGATGCTGTCCTTTTATCACATCCAG
gtcacgcattgcttaaaagatttccaatagtggtagtccttatccatattttcagGAGAGAAGATATCACCAATCGAAGTGGATGCTGTCCTTTTATCACATCCAGACATTGCTCAAGCGGTTGCTTTTGGGGTTCCAGATGACAAATACGGCGA
tattttc CT-rich tract
ttaaaagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttaccgcaaaattaccaaatatccactcattctatttaattaggtcacgcattgcttaaaagatttccaatagtggtagtccttatccatattttcagGAGAGAAGATATCACCAATCGAAGTGGATGCTGTCCTTTTATCACATCCAGACATTGCTCAAGCGGTTGCTTTTGGGGTTCCAGATGACAAATACGGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - -aaaatta
- - - - - - - - ccaaata
- - - - - - - - - - - - ccactca
- - - - - - - - - - - - - - - - - - - - - - - tcacgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagat