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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatattgaatttatcataaatgatcgttttcttgttttaaattttccttttattgcccaccttctgtagctttgatgaatatgaataatagtaacttccttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA

Basic information

species Vitis vinifera
transcript Vv16s0050g00080.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g00080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G38080.1 (Glycine max), 3'ss of exon 2
gtaatattgaatttatcataaatgatcgttttcttgttttaaattttccttttattgcccaccttctgtagctttgatgaatatgaataatagtaacttccttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA
||    ||||  || ||||       | |  | ||  ||||    || | | |  ||   || ||   |     | ||   ||||  |  |   ||  | |||    ||||  ||||||||||| |||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||  |||||||| |||||
gtgtgtttga--ttgtcattgtgacacttgattttcctttaggcatttcatatgctg---acattacatcctaataattcctatgctttct--caatcttctt----cagATGCTGTGCTTGCAAGAGTTGCAACCGAGAAGAGGCTGTCACTAATCAAAGCATGGGAAGAAAGTGAAAAGTCCAAAGCAGATAACAA

upper sequence: Vv16s0050g00080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G29740.1 (Glycine max), 3'ss of exon 2
gtaatattgaatttatcataaatgatcgttttcttgttttaaattttccttttattgcccaccttctgtagctttgatgaatatgaataata---gtaacttcct----tttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA
                  |   || | ||  |  ||     | ||    |   ||| | ||  |  | |        |  ||   ||||||     |  ||||      || ||||||  |||| |||||  |||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||  ||| ||||||||||
---------------gtgtgtttggttgtcattgtgac---acttgatatcccattacgcatttcatatgctgacattacatcctaataattcctatgccttctcattcttcttcagATGCTGTCCTTGCGAGAGTTGCAACTGAGAAGAGGCTGTCACTAATCAAAGCATGGGAAGAAAGTGAAAAGTCAAAATCAGAGAACAA

upper sequence: Vv16s0050g00080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G31290.2 (Glycine max), 3'ss of exon 1
gtaatattgaatttatcataaatgatcgttttcttgttttaaattttccttttattgcccaccttctgtagctttgatgaatatgaataatagtaacttccttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA
           | | ||||   |  || || |  |||||  |||||  |||    |||||   ||   |  | |||  || ||||   | ||         | | ||||||  | ||||||||| |||||||||| ||||||||  | |||||||||| ||||||||||||||||||||| |  ||||| || |||||
----------gtatgtcat---ttgtcattatgatgttt--aatttctcttcatgtgcccttttttattgacattgcagattatgt-cattaagcctcatttgtcttcagATGCAGTGCTTGCAAGAGTTGCAACTGAGAAGAGATTGTCACTAATCAAAGCATGGGAAGAAAGTGAAAAATCAAAAGCTGAAAACAA

upper sequence: Vv16s0050g00080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G25800.2 (Glycine max), 3'ss of exon 2
gtaatattgaatttatcataaatgatcgttttcttgttttaaattttccttttattgcccaccttctgtagctttgatgaatatgaataatagtaacttcctt-ttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA
           | ||||||   |   | || |    | | | |||  | ||||||   ||  ||| |||| | |      | || || | |  |  ||   || | ||||||  | ||||||||| |||||||||| ||||||||| | ||| |||||| ||||||||||||||||||||| |  ||||| || |||||
----------gtatatcatttgtctacattatgacatct-atattccctttttatgtacc--cttttgtatcct-----gacattaaaatttttgcctcgtttgtcttcagATGCGGTGCTTGCAAGAGTTGCAACTGAGAAGAGGTTGTCATTAATCAAAGCATGGGAAGAAAGTGAAAAATCAAAAGCTGAAAACAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110397997|gb|EC964042.1|EC964042
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|349827462|gb|FQ422330.1|FQ422330
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGT---C--A-                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|110701591|gb|EE079339.1|EE079339
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|351020365|gb|FQ445972.1|FQ445972
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|110692641|gb|EE072119.1|EE072119
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|110374943|gb|EC939889.1|EC939889
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|110394019|gb|EC958374.1|EC958374
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|56409507|gb|CX017759.1|CX017759
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|29783949|gb|CB344101.2|CB344101
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|37190279|gb|CF609628.1|CF609628
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|30322525|gb|CD005787.1|CD005787
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|37186543|gb|CF605896.1|CF605896
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|77579827|gb|DV218793.1|DV218793
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|33406229|gb|CF211856.1|CF211856
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|27755276|gb|CB036031.1|CB036031
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACATAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|110366193|gb|EC929937.1|EC929937
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|33406137|gb|CF211764.1|CF211764
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|110380609|gb|EC945888.1|EC945888
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|28965124|gb|CB344157.1|CB344157
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|56409736|gb|CX017988.1|CX017988
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|110416964|gb|EC982982.1|EC982982
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|71872560|gb|DT021615.1|DT021615
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|110693803|gb|EE070355.1|EE070355
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|351057040|gb|FQ448557.1|FQ448557
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGGGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|352795758|gb|FQ480346.1|FQ480346
EST:     TCCAGAACCCATTGAAGAGAAGGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|351033526|gb|FQ446992.1|FQ446992
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAT
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|110708527|gb|EE086168.1|EE086168
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|110422273|gb|EC988591.1|EC988591
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|351019268|gb|FQ429428.1|FQ429428
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|110418793|gb|EC984969.1|EC984969
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|27581608|gb|CB004303.1|CB004303
EST:     GAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: GAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|351023530|gb|FQ432913.1|FQ432913
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAT
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|27580860|gb|CB003555.1|CB003555
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|110412405|gb|EC978153.1|EC978153
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|71858022|gb|DT007077.1|DT007077
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: gi|351020250|gb|FQ445857.1|FQ445857
EST:     TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG                         ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcccaccttctgtagctttgatgaatatgaataatagtaacttccttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA
                                   tagtaac  putative branch site (score: 1)
                                      taacttccttttttc  CT-rich tract
                        aatatgaataatagta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatattgaatttatcataaatgatcgttttcttgttttaaattttccttttattgcccaccttctgtagctttgatgaatatgaataatagtaacttccttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA