Sequence
atgc intronic sequence ATGC exonic sequence...ggaccctgttgatgcagtcccatcctcctatatttcgaggtcaatatggaccttccgcattttttgttttcatatgtgaactgaatgtaagatatttcagGTGGGCTGCAATCGCTTCAAAAATACCTGGTAGAACGGACAATGAGATCAAGAACTTCTGGAACACCCATCTAAAGAAGCGCCTCCTGGGCAACCACCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g00070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G040924_T01 (Zea mays), 3'ss of exon 2
-ggaccctgttgatgcagtcccatcctcctatatttcgaggtcaatatggaccttccgcattttttgttttcatatgtgaactgaatgtaagatatttcagGTGGGCTGCAATCGCTTCAAAAATACCTGGTAGAACGGACAATGAGATCAAGAACTTCTGGAACACCCATCTAAAGAAGCGCCTCC--TGGGCAACCACCAA
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atattcctatttctgccatgatacttggtgattgctactgctgggacttgaaagtatattgatggtctttttttttctggtgttggtccttctt-cctcagGTGGTCCATGATCGCGGCGCAGCTCCCTGGCCGGACGGACAACGAGATCAAGAACTACTGGAACACGCACCTCAAGAAGCAGCTGCGTCGGATGGGCCTC--
upper sequence: Vv16s0050g00070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G111045_T01 (Zea mays), 3'ss of exon 2
-ggaccctgttgatgcagtcccatcctcctatatttcgaggtcaatatggaccttccgcattttttgttttcat-atgtgaactgaatgtaagatatttcagGTGGGCTGCAATCGCTTCAAAAATACCTGGTAGAACGGACAATGAGATCAAGAACTTCTGGAACACCCATCTAAAGAAGCGCCTC--CTGGGCAACCACCAA
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gacagtttgattgtcataaataatattgttgcattctctcg--agaacgaacggcatacgttgacggttttttttatctggtgttgatcctggtacctcaagGTGGTCCATGATCGCGGCGCAGCTCCCAGGCCGGACGGACAACGAGATCAAGAACTACTGGAACACGCACCTCAAGAAGCAGCTGCGCCGGATGGGCCTC--
upper sequence: Vv16s0050g00070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G29730.1 (Glycine max), 3'ss of exon 2
--ggaccctgttgatgcagtcccatcctcctatatttcgaggtcaata--tggaccttccgcattttttgttttcatatgtgaactgaatgtaagatatttcagGTGGGCTGCAATCGCTTCAAAAATACCTGGTAGAACGGACAATGAGATCAAGAACTTCTGGAACACCCATCTAAAGAAGCGCCTCCTGGGCAACCACCAA
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gagaatgaggactttcaagtttcataaa--taacctttgacctccatactttaatatttggttgcattaatctgtacttgtgatattatcgtat--tcacttagGTGGGCTTCTATAGCATCTCAACTACCTGGAAGAACAGACAATGAGATTAAGAACTTCTGGAACACCCATCTAAAGAAGCGTCTCCTTCGATCATGTCAT
upper sequence: Vv16s0050g00070.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G38090.1 (Glycine max), 3'ss of exon 2
ggaccctgttgatgcagtcccatcctcctatatttcgaggtcaatatggaccttccgcatttt-----ttgttttcat--atgtgaactgaatgtaagatatt---tcagGTGGGCTGCAATCGCTTCAAAAATACCTGGTAGAACGGACAATGAGATCAAGAACTTCTGGAACACCCATCTAAAGAAGCGCCTCCTGGGCAACCACCAA
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----------aaggaaaaggagaactttcaaatttcataaataaccttagacctccatactttgatagttggttgcattaatccgtacttgtgatattatattcacttagGTGGGCTTCTATAGCATCCCAACTACCTGGAAGAACAGACAATGAGATTAAGAACTACTGGAATACCCATCTGAAGAAGCGTCTCCTTCGATCATGTTAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atggaccttccgcattttttgttttcatatgtgaactgaatgtaagatatttcagGTGGGCTGCAATCGCTTCAAAAATACCTGGTAGAACGGACAATGAGATCAAGAACTTCTGGAACACCCATCTAAAGAAGCGCCTCCTGGGCAACCACCAA
attttttgttttcata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggaccctgttgatgcagtcccatcctcctatatttcgaggtcaatatggaccttccgcattttttgttttcatatgtgaactgaatgtaagatatttcagGTGGGCTGCAATCGCTTCAAAAATACCTGGTAGAACGGACAATGAGATCAAGAACTTCTGGAACACCCATCTAAAGAAGCGCCTCCTGGGCAACCACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - cctgttg
- - - - - - tgcagtc
- - - - - - - - - -ccatcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaatg