Sequence
atgc intronic sequence ATGC exonic sequence...gggacagaaactattctccatgagaaactcaattcttggttgtggatgttccttattttgtattgaaatgattgaatttatcaatattttcattgatcagGTGGTCTCAGATAGCGCAGAATTTTCCTGGAAGAACTGATAATGAGATTAAGAACTACTGGCATTCATGTCTCAAGAAGAAAGTGGTGAAAGCTCAGGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g00050.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G25590.1 (Glycine max), 3'ss of exon 2
-gggacagaaactattctccatgagaaactcaattcttggttgtggatgttccttattttgtattgaaatgattgaatttatcaatattttcattgatcagGTGGTCTCAGATAGCGCAGAATTTTCCTGGAAGAACTGATAATGAGATTAAGAACTACTGGCATTCATGTCTCAAGAAGAAAGTGGTGAAAGCTCAGGAA
| || ||| || | | ||| | || || || | || || |||| || | || || | |||| |||||||||||||||||| ||| |||| || ||||| ||||| |||||| | || || ||||||||||||| | | || |||||||| | |||||| |||||
cattttgcagtgtacactctttggttttccctatttctttcctataatattttttttattaatggaaactgatgaaagcaaataaaatcat-attggccagGTGGTCTCAGATAGCACAGCATTTGCCAGGAAGGACTGACAATGAGGTAAAAAATTACTGGCATTCATATTTGAAAAAGAAAGTCATCAAAGCTAAGGAA
upper sequence: Vv16s0050g00050.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G31280.1 (Glycine max), 3'ss of exon 2
-gggacagaaactattctccatgagaaactcaatt-cttggttgtggatgttccttattttgtattgaaatgattgaatttatcaatattttcattgatcagGTGGTCTCAGATAGCGCAGAATTTTCCTGGAAGAACTGATAATGAGATTAAGAACTACTGGCATTCATGTCTCAAGAAGAAAGTGGTGAAAGCTCAGGAA
| || ||| ||| | ||| ||| | | | || || || | || || |||| |||| | | | |||| |||||||||||| ||||| ||| |||| || ||||| ||||| |||||||| || || || |||||||||| | | || ||||||| | | ||||| |||||
cattttccagtgtacactctttgatttttcctatttctttgctata-atattttttttatta-atggaaaattctgaaaacaaattaaatcatattggccagGTGGTCTCAAATAGCACAGCATTTGCCAGGAAGGACTGACAATGAGATAAAAAATTATTGGCATTCATATTTGAAAAAGAAAGAGATCAAAGCCAAGGAA
upper sequence: Vv16s0050g00050.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G38110.1 (Glycine max), 3'ss of exon 2
--gggacagaa-actattctccatgagaaactcaattcttggttgtggatgttccttattttgtattgaaatgattgaatttatcaatattttcattgatcagGTGGTCTCAGATAGCGCAGAATTTTCCTGGAAGAACTGATAATGAGATTAAGAACTACTGGCATTCATGTCTCAAGAAGAAAGTGGTGAAAGCTCAGGAA
| | || |||| | |||| | ||| |||| || || | | | | |||| ||| | | ||| | | | || |||| |||||||| |||||| | ||| |||| || ||||| || || ||||||||||| ||||| |||||||||| | | || |||| ||||| |||||| |||||
cagaaattcaacactactttcca-gtaaaataaaatttgcagt-gtaatttcttcctctttta-attaagactgctgagagcaacttgaattatattggctagGTGGTCACAGATATCACAGCATTTGCCAGGAAGGACAGACAATGAGATTAAAAACTATTGGCATTCATATTTGAAAAAGAGAGTGGCCAAAGCTAAGGAA
upper sequence: Vv16s0050g00050.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G29710.1 (Glycine max), 3'ss of exon 2
-gggacagaaactattctccatgagaaactcaattcttggttgtggatgttccttattttgtattgaaatgattgaatttatcaatattttcattgatcagGTGGTCTCAGATAGCGCAGAATTTTCCTGGAAGAACTGATAATGAGATTAAGAACTACTGGCATTCATGTCTCAAGAAGAAAGTGGTGAAAGCTCAGGAA
| | | || || | | | ||||| | | || | | ||| ||| | | ||| | | | || |||| |||||||| | |||| | ||| |||| |||||||| || || ||||||||||| ||||| |||||||||| | | || |||| ||||| |||||| |||||
actttccggtaaaataaaatattgcagtgtaatttctttcctata-atttcttccacttttaattaagactgctgagagcaacttgaattatattggctagGTGGTCACGGATATCACAGCATTTGCCTGGAAGGACAGACAATGAGATTAAAAACTATTGGCATTCATATTTGAAAAAGAGAGTGGCCAAAGCTAAGGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgttccttattttgtattgaaatgattgaatttatcaatattttcattgatcagGTGGTCTCAGATAGCGCAGAATTTTCCTGGAAGAACTGATAATGAGATTAAGAACTACTGGCATTCATGTCTCAAGAAGAAAGTGGTGAAAGCTCAGGAA
ttttcatt CT-rich tract
ttattttgtattgaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gggacagaaactattctccatgagaaactcaattcttggttgtggatgttccttattttgtattgaaatgattgaatttatcaatattttcattgatcagGTGGTCTCAGATAGCGCAGAATTTTCCTGGAAGAACTGATAATGAGATTAAGAACTACTGGCATTCATGTCTCAAGAAGAAAGTGGTGAAAGCTCAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - cagaaac
- - - - - - - tctccat
- - - - - - - - - - -gagaaac
- - - - - - - - - - - - - - - - ttcttgg
- - - - - - - - - - - - - - - - - - - - -gtggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaatga