Sequence
atgc intronic sequence ATGC exonic sequencegtaagtttccaatccttaatatccctttctagtacatgatttgtatttttttaaaacttcattttgtatgttttggaatgatttgaagctgttgatgcatgatagagcctattccatatttatgactttgttaaaggggatgatggagcagAATTTTAGCAGGTTCAGTTGCGGGTTTGTCTATTCTAGCCTTAGATGATTCTAGTAGGAGACGTACACTTGCTTTATATCTTGCAGCTAGGCTTGCCCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0039g02700.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os07g31260.1 (Oryza sativa), 3'ss of exon 2
gtaagtttccaatccttaatatccctttctagtacatgatttgtatttttttaaaacttcattttgtatgttttggaatgatttgaagctgttgatgcatgatagagcctattccatatttatgactttgttaaaggggatgatggagcagAATTTTAGCAGGTTCAGTTGCGGGTTTGTCTATTCTAGCCTTAGATGATTCTAGTAGGAGACGTACACTTGCTTTATATCTTGCAGCTAGGCTTGCCCAG
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-------------------------------------------tggtccctaaaaagt-------agataggtccaaagcatgttaattttttattataagattacctcgaata-atgttcatggactcaactgaaggcgtgatggagcagAATATTAGCAGGTTCGGTGGCAGGCTTGGCGATAGTAGCGCTAGATGATTCAAGTAGGAGGCGCACCCTTTCTCTATATCTTCTGGCAAGGCTTGCCCAG
upper sequence: Vv16s0039g02700.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G175799_T02 (Zea mays), 3'ss of exon 2
----------gtaagtttccaatccttaatatccctttctagtacatgatttgtatttttttaaaacttcatttt--gtatgttttggaa--tgatttgaagctg-ttgatgcatgatagagcctattccatattt----------------atgactttgttaaaggggatgatggagcagAATTTTAGCAGGTTCAGTTGCGGGTTTGTCTATTCTAGCCTTAGATGATTCTAGTAGGAGACGTACACTTGCTTTATATCTTGCAGCTAGGCTTGCCCAG
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gtaagtgcctatatgctatgactccttgcc-tatattttcaatgca-gagctctggttttttagaagttttttttaagtatgtacctaaccttggttagtcactaataggtcgatactaggctattttctatatttttctcaaatcatatccatgactcaactgaagggcgtgatggagcagAATATTAGCAGGTTCGGTGGCAGGATTGGCCATACTAGCACTGGATGATTCAAGTAGGAGGCGTACTCTATCTTTATATCTTCTAGCAAGGCTCGCTCAG
upper sequence: Vv16s0039g02700.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G33510.1 (Glycine max), 3'ss of exon 2
gtaagtttccaatccttaatatccctttctagtacatgatttgtatttttttaaaacttcattttgtatgttttggaatg-atttgaagctgttgatgcatgatagagcctattccatatttatgactttgttaaaggggatgatggagcagAATTTTAGCAGGTTCAGTTGCGGGTTTGTCTATTCTAGCCTTAGATGATTCTAGTAGGAGACGTACACTTGCTTTATATCTTGCAGCTAGGCTTGCCCAG
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gtaagttgcagctc----aaactgctttctggatttatttttgtagcttctcagttaattttttttaagcttttgttttggatattgttttgttgtt-tgtgtttgcacgcgttgcttatttatgactttgtttaaggggatgatggcgcagAATTTTAGCAGGTTTAATAGCTGGTTTCTCAATTATGGCATTAAATGATTCAAATAGGAGACGCACACTGGCTTTATACCTGTTGGCTAGGCTAGCCCAG
upper sequence: Vv16s0039g02700.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G34070.1 (Glycine max), 3'ss of exon 2
gtaagtttc----caa------tccttaatatccctttctagtacatgatttg--tatttttttaaaacttcattttgtatgttttggaatgatttgaagctgttg----atgcatgatagagcctattccatatttatgactttgttaaaggggatgatggagcagAATTTTAGCAGGTTCAGTTGCGGGTTTGTCTATTCTAGCCTTAGATGATTCTAGTAGGAGACGTACACTTGCTTTATATCTTGCAGCTAGGCTTGCCCAG
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gtaagttgcagctcaaactgttttcttgatttattcttgtagcttctcagttaactatttttttcaagctt----ttgt-tatttttaaatagttggatattgttttgctgtttgtgtttgcacgtgttgcttatttatgactttgtttaaggggatgatggtgcagAGTTTTAGCAGGTTCTATAGCTGGTTTCTCGATTATGGCATTGAATGATTCAAATAGGAGACGTACACTGGCTTTATACCTGTTGGCTAGGCTAGCCCAG
upper sequence: Vv16s0039g02700.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G51150.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaagtttccaatccttaatatccctttctagtacatgatttgtatttttttaaaacttcattttgtatgttttggaatgatttgaagctgttgatgcatgatagagcctattccatatttatgactttgttaaaggggatgatggagcagAATTTTAGCAGGTTCAGTTGCGGGTTTGTCTATTCTAGCCTTAGATGATTCTAGTAGGAGACGTACACTTGCTTTATATCTTGCAGCTAGGCTTGCCCAG
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gtaagtttat-----tttatttatttgtgttgcctaagatttcgattgttgtatctcttttcttataatgcttctactttttactttgtgcatagtgcttga-aaagtatattccttatt-atgactttgattaaggg-----tggagcagAGTCTTAGCAGGTTCAGTTGCGGGTTTGTCTATCTTGGCTTTAGATGATTCCAACCAGCGTCGCACACTTGCTCTATACCTCTTGGCTAGATTAGGCCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294965652|gb|GW837251.1|GW837251EST: GAAAGAAACTCCTCTGAATGC GATTTTAGCAGGTTCAGTTGCGGGTTTGTCTATTCTAGCCTTAGATGATTC
genomic: GAAAGAAACTCCTCTGAATGCgtaagtttcc ... gatggagcagAATTTTAGCAGGTTCAGTTGCGGGTTTGTCTATTCTAGCCTTAGATGATTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcatgatagagcctattccatatttatgactttgttaaaggggatgatggagcagAATTTTAGCAGGTTCAGTTGCGGGTTTGTCTATTCTAGCCTTAGATGATTCTAGTAGGAGACGTACACTTGCTTTATATCTTGCAGCTAGGCTTGCCCAG
tattccatatttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtttccaatccttaatatccctttctagtacatgatttgtatttttttaaaacttcattttgtatgttttggaatgatttgaagctgttgatgcatgatagagcctattccatatttatgactttgttaaaggggatgatggagcagAATTTTAGCAGGTTCAGTTGCGGGTTTGTCTATTCTAGCCTTAGATGATTCTAGTAGGAGACGTACACTTGCTTTATATCTTGCAGCTAGGCTTGCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT