Sequence
atgc intronic sequence ATGC exonic sequence...atgacgggtccaacttggagtgagccacggaaagatagtcttagtttttctaatattcattagctttcttacacctgaccgcttggtcttttctatgcagGGTAGCTGAAAAAGATTGGGGAGCTGATTTTAGAAAGATGTCTGCTGGTTCTGCTCTTGTTGGCCTCACTTTGTGGCTTGACCACATGCAGGCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0039g02570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os06g09880.1 (Oryza sativa), 3'ss of exon 2
atgacgggtccaacttggagtgagccacggaaagatagtcttagtttttctaatattcattagctttcttacacctgaccgcttggtcttttctatg----------cagGGTAGCTGAAAAAGATTGGGGAGCTGATTTTAGAAAGATGTCTGCTGGTTCTGCTCTTGTTGGCCTCACTTTGTGGCTTGACCACATGCAGGCAA
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--------actaggtttaatttccttatgattatg-agtattggtaaatccaaagcggaacgattgtttc-tactgtattgattaatcattttcttggtgaatggctcagAGTGGAAGAAAAAGATTGGGGAGCTGACTTACGCAAGTTGTCTGCTGGGGCTGCTCTTGTTGCTCTAACATTGTGGCTTGATCAGATGCAA----
upper sequence: Vv16s0039g02570.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G053196_T01 (Zea mays), 3'ss of exon 2
--atgacgggtccaacttggagtgagccacggaaagatagtcttagtttttctaatattcattagctttcttacacctgaccgcttggtcttttcta-tgcagGGTAGCTGAAAAAGATTGGGGAGCTGATTTTAGAAAGATGTCTGCTGGTTCTGCTCTTGTTGGCCTCACTTTGTGGCTTGACCACATGCAGGCAA
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gttttaccgttttagtatgttcttcttctggttatgatatctgcaaagtggc-aatattgaattaatctat--ctgttaactttttattggtgaatggctcagCGTGGCACAAAAGGACTGGGGCGCTGACTTCCGGAAGCTGTCTGCTGGGGCTGCACTTGTTGGTCTTACTTTGTGGCTTGATCACATGCAA---- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttctaatattcattagctttcttacacctgaccgcttggtcttttctatgcagGGTAGCTGAAAAAGATTGGGGAGCTGATTTTAGAAAGATGTCTGCTGGTTCTGCTCTTGTTGGCCTCACTTTGTGGCTTGACCACATGCAGGCAA
tcttttctat CT-rich tract
taatattcatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgacgggtccaacttggagtgagccacggaaagatagtcttagtttttctaatattcattagctttcttacacctgaccgcttggtcttttctatgcagGGTAGCTGAAAAAGATTGGGGAGCTGATTTTAGAAAGATGTCTGCTGGTTCTGCTCTTGTTGGCCTCACTTTGTGGCTTGACCACATGCAGGCAA
- - - - tccaact
- - - - - - - - - - - - - - ggaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgacc