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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taacagttgatcatattgtacatgtattatactatggatgttgatgtgtcgaatggagcttcagattgattttaattgatcattttctggtaatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGGATGTAGGTGGACAAGAGAAACTCAGGCCACTCTGGAGGCATTACTTTAA

Basic information

species Vitis vinifera
transcript Vv16s0039g02240.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g02240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os02g47110.1 (Oryza sativa), 3'ss of exon 2
taacagt-tgatcatattgtacatgtattatactatggatgttgatgtgtcgaatgg---agcttcagattgattttaattgatcattttctggtaatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGGATGTAGGTGGACAAGAGAAACTCAGGCCACTCTGGAGGCATTACTTTAA
  | | | | |||||    |  |||   |    |    |   |||  | ||   | |    |   | |||||||  |  |    | || |   |||  |   ||| |||||||| |||||||| ||||| |||||||||||||| ||||| |||||||| ||||| ||||||||  | ||||| || |||||||||||||| ||
-gatattatcatcatggcttttatggggttatttgaaaaatctgacatctcactttgctgggacactgattgatgct--tctgcctttgtgctgtaccac-cagGGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGGATGTCGGTGGCCAAGAGAAGTTGAGGCCTCTGTGGAGGCATTACTTCAA

upper sequence: Vv16s0039g02240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os10g42940.1 (Oryza sativa), 3'ss of exon 2
------taacagttgatcatat-tgtacatgtattatactatggatgttgatgtgtcgaatggagcttcagattgattttaattgatcattttctggtaatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGGATGTAGGTGGACAAGAGAAACTCAGGCCACTCTGGAGGCATTACTTTAA
      | ||  |    | |   |      |  | ||   ||   |  |  ||| | ||    |     |     |  | |  | |||||  ||    |  ||  ||| ||||| |||||||||||||| || ||||| ||| ||||||| ||||||||||| ||||| || || ||| | |||||  | |||||||| ||||| ||
gtaggttcactctcatccctccctccctccgcctcatcgaatcttttattttgttttgagccaaatccaaacccaacctaacatcatcatcatc-atcatcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAA

upper sequence: Vv16s0039g02240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G011518_T03 (Zea mays), 3'ss of exon 2
------------------------------------------------taacagttgatcatattgtacatgtattatactatggatgttgatgtgtcgaatggagc-ttcagattgattttaattgatcattttctggtaatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGGATGTAGGTGGACAAGAGAAACTCAGGCCACTCTGGAGGCATTACTTTAA
                                                 |||  ||| | ||  |  |  |||   |  ||     ||        | || | |  | |||| ||   |  | |  |       | |   |   | ||||||||||||| ||||| ||||| || ||||| ||  ||||||| ||||||||||| ||||| || ||||| |||||||| || |||||||| ||||| ||
gtccgattgtaccacctatctgcttgtgcatttcataacttttggtttcaaccattgctaat--tacagttgtccaactctgcacctgccatgcaattgattcgtccgttcatatgtttagtgacagcatgcactttatcacattgtagGTTTCAATGTTGAGAAGGTTCAATACAAGAATGTAGTGTTCACCGTGTGGGATGTTGGTGGCCAGGAGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAA

upper sequence: Vv16s0039g02240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G113995_T03 (Zea mays), 3'ss of exon 2
taacagttgatcatattgtacatgtattatactatggatgttgatgtgtcgaatggagcttcagattgattttaattgatcattttctggtaatat--atagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGGATGTAGGTGGACAAGAGAAACTCAGGCCACTCTGGAGGCATTACTTTAA
|  | ||      |      || |  |  | | ||     || |       | |    || || |||  | |     |||   | ||||||  |||   |||||||||| || ||||||||||| || ||||| |||||||| || ||||||||||| ||||| ||||| ||  | |||||  | |||||||| ||||| ||
ttcctgtcttaattgaaaggcagggctcctgccattacatttaaaaca--aactttccctgcaaattcgtctgtgacgatatgtctctggtgctatcactagGTTTCAACGTCGAGAAAGTTCAATACAAGAATGTGATGTTTACTGTGTGGGATGTTGGTGGCCAAGAAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAA

upper sequence: Vv16s0039g02240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G106795_T03 (Zea mays), 3'ss of exon 2
-taacagttgatcatattgtacatgtattatactatggatgttgatgtgtcgaatggagcttcagattgattttaattgatcattttctggtaatat--atagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGGATGTAGGTGGACAAGAGAAACTCAGGCCACTCTGGAGGCATTACTTTAA
  || |  |  | | |   |  |||     |||||   ||    |||| ||   | |  || || ||| || |    ||||   | |||| |  ||    ||||||||||||| ||||||||||| || ||||| |||||||| || || |||||||| ||||| ||||| ||  | |||||  | |||||||| ||||| ||
ccaatatgttcttaaaggttttatgaggattactaaaaata--aatgtttcactttgc-ctgcaaattcatgtgtgatgatatctctctgatgctactactagGTTTCAATGTCGAGAAAGTTCAATACAAGAATGTGATGTTTACTGTTTGGGATGTTGGTGGCCAAGAAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAA

upper sequence: Vv16s0039g02240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G43910.2 (Glycine max), 3'ss of exon 3
taacagttgatcatattgtacatgtattatactatggatgttgatgtgtcgaatggagcttcagattgatttt---aattgatcattttctggtaatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGGATGTAGGTGGACAAGAGAAACTCAGGCCACTCTGGAGGCATTACTTTAA
       ||   |||| |||   |        | |   | |||    | | ||||   || || | || || |     ||  | | ||| |  |    |  ||||||||||||||||||||||||||||||||| || || |||||||| |||||||| || |||||||||||||| |||||||| |||||||| |||||| |
-gttgaatgtctatatggtattggcgccgc-ttgttagttttggccag-caaatgagtctacataatgtttctctaggtttttaaatttatattgccttgcagGTTTCAATGTGGAGAAAGTTCAGTATAAGAATGTTATTTTCACAGTCTGGGATGTTGGAGGACAAGAGAAACTAAGGCCACTTTGGAGGCACTACTTTGA

upper sequence: Vv16s0039g02240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G01380.2 (Glycine max), 3'ss of exon 3
taacagttgatcatattgtacatgtattatactatggatgttgatgtgtcgaatggagcttcagattgatttta---attgatcattttctggtaatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGGATGTAGGTGGACAAGAGAAACTCAGGCCACTCTGGAGGCATTACTTTAA
 |  |  ||   |||| |||  ||   |    | |   | |||   || | ||||   || || |||| || |     || || | ||| |  |    |  |||||||||||||||||||||||||||||| || || || |||||||| |||||||| || |||||||||||||| |||||||| |||||||| || |||||
-attaagtgtctatatggtat-tgacctggcttgttagttttggcctg-caaatgagtctacatattgtttctctatgtttataaatttatattgccttgcagGTTTCAATGTGGAGAAAGTTCAGTATAAAAATGTTATTTTCACAGTTTGGGATGTTGGAGGACAAGAGAAACTAAGGCCACTTTGGAGGCACTATTTTAA

upper sequence: Vv16s0039g02240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G02110.1 (Glycine max), 3'ss of exon 2
-taacagttgatcatattgtacatgtattatactatggatgttgatgtgtcgaatggagcttcagattgattttaattgatcattttctggtaatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGGATGTAGGTGGACAAGAGAAACTCAGGCCACTCTGGAGGCATTACTTTAA
  ||||  |     |||   || |   ||  ||   ||| |    |      ||   |  |   | ||  ||     | |    ||| | ||  | |  |||||| ||||||||||| |||||||||||||| ||  | ||||| || |||||||| || || ||||||||| | ||| |||| |||||||| || |||||
caaacatgtaccagtatcacacttaagtttaacaggggaaga-actagaaataacctatatgttgtttatttaaggcttacggatttgtagtgctttgcagGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGGATGTTGGAGGGCAAGAGAAATTAAGGGCACTTTGGAGGCACTATTTTAA

upper sequence: Vv16s0039g02240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G09790.3 (Glycine max), 3'ss of exon 1
taacagttgatca-tattgtacatgtattatactatggatgt-tgatgtgtcgaatggagcttcagattgatt--ttaa--ttgatcattttctggtaatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGGATGTAGGTGGACAAGAGAAACTCAGGCCACTCTGGAGGCATTACTTTAA
      |  | || |||   || |   ||   ||  ||| |  | |   || |||   | ||  | |||| ||  ||||   | ||   ||| | ||  | |  |||||| ||||||||||| |||||||||||||| ||  | ||||| || |||||||| || || ||||||||| | ||| |||| |||||||| || |||||
------tgtaccagtatcacacttaagtttagctgaggaagaattagaagtagaaataacctatatattgtttgattaaggcttatagatttgtagtgctttgcagGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGGATGTTGGAGGGCAAGAGAAATTAAGGGCACTTTGGAGGCACTATTTTAA

upper sequence: Vv16s0039g02240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G17060.1 (Arabidopsis thaliana), 3'ss of exon 2
taacagttgatcatattgtacatgtat-tat-actatggatgt-tgatgtgtcgaatggagcttcagattgattttaattgatcatttt--ctggtaatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGGATGTAGGTGGACAAGAGAAACTCAGGCCACTCTGGAGGCATTACTTTAA
       |  | | ||| ||| | ||| ||| | ||| | | | | || |  |   |||   ||  |||| || |    |||  ||||   ||  |  ||   ||| |||||||| |||||||||||||| ||||| |||||||||||||| |||||||| ||||| ||||||||||| || || || |||||||||||||| ||
----ttcttgtgacattatacttttatctatgattattgttctgtcattttccttttggttgtttggatt-atgtctgctgacaatttaaacttatgttactcagGATTCAATGTTGAGAAAGTTCAGTACAAGAATGTGATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAACTGAGACCTCTTTGGAGGCATTACTTCAA

upper sequence: Vv16s0039g02240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G03120.1 (Arabidopsis thaliana), 3'ss of exon 2
taacagttgatcatattgtacatgtattatactatggatgttgatgtgtcgaatggagcttcagattgattttaattgatcattttctggtaat-atatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGGATGTAGGTGGACAAGAGAAACTCAGGCCACTCTGGAGGCATTACTTTAA
     || | ||| ||||  || | ||| |  |||   | |||   | ||  ||  | |||   |  | |||  | |||  |||||    |  | | | |||||||||||| |||||||||||||| ||||| || || |||||||| |||||||| ||||| |||||||| || |||||  | |||||||||||||| ||
-----gtaggtcagattgctcaagcatttt--tattttttttgcgttttctcatttatcttacaacgggttt--actgaggattttaaatttcttacacagGTTTCAATGTTGAGAAAGTTCAGTACAAGAATGTCATCTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAGCTGAGGCCCTTGTGGAGGCATTACTTCAA

upper sequence: Vv16s0039g02240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S47_298V6.1 (Physcomitrella patens), 3'ss of exon 2
----------------------------------------------------------------------------------taacagttgatcatattgtacatgtattatactatggatgttgatgtgtcgaatggagcttcagattg--attt--taattgatcattttctggtaatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGGATGTAGGTGGACAAGAGAAACTCAGGCCACTCTGGAGGCATTACTTTAA
                                                                                  ||   |  | |  | |  |  ||||||||| || ||     || || ||  | | |   |  ||  ||  ||||  ||| |  |  |  |   | |||||  ||| ||||||||||||||||||||||| ||||||||   ||| |||||||||||||| || || ||||||||| |  |||| || ||| ||||||| || ||
gtagcttgacttaacacttccagttgatccttttgtatttgaaagagcccctcttcgtttctgcttatttgatgtatttgcttatttgacggtgttttgtttgatgtattattctgtgtcgagtgctg-gtgaatttgctttcgaggatgtcatttgttaagttgttgtggttatgcaatattcagGGTTCAATGTGGAGAAAGTTCAGTACAAGAACGTCGAGTTTACAGTGTGGGATGTTGGAGGTCAAGAGAAATTGCGGCCTCTGTGGCGGCATTATTTCAA

upper sequence: Vv16s0039g02240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ08154 (Selaginella moellendorffii), 3'ss of exon 2
taacagttgatcatattgtacatgtattatactatggatgttgatgtgtcgaatggagcttcagattgattttaattgatcattttctggtaatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGGATGTAGGTGGACAAGAGAAACTCAGGCCACTCTGGAGGCATTACTTTAA
                          | || || |   |  || | | | |  |      |  |  |  | ||  | ||    | |    |  |   |||| || || |||||||| || ||||| ||||| ||| ||||||| ||||||||||| ||||| || ||||| || || || ||||||| ||| ||||||| 
-------------------------gtaatccttttt-ttctggtttcttggctttcatcttggcct--tcttgctcgactgatgtg-aatccttgctagGATTTAACGTGGAGAAGGTCCAGTACAAGAATGTGGTGTTCACGGTGTGGGATGTGGGTGGCCAGGAGAAGCTAAGACCGCTCTGGAAGCACTACTTTAG

upper sequence: Vv16s0039g02240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ24533 (Selaginella moellendorffii), 3'ss of exon 2
taacagttgatcatattgtacatgtattatactatggatgttgatgtgtcgaatggagcttcagattgattttaattgatcattttctggtaatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGGATGTAGGTGGACAAGAGAAACTCAGGCCACTCTGGAGGCATTACTTTAA
       | ||| | || | |  || |  |    |  || ||||  |      | ||  |   || |||| | |||       || ||          ||| || || |||||||| || ||||| ||||| ||| ||||||| ||||||||||| ||||| || ||||| || || || ||||||| ||| ||||||| 
------gtaatcct-tttttctggtttcttggctttcatcttgaccttcttgctcgatttctcgactgatgtgaatc-----cttgct----------agGATTTAACGTGGAGAAGGTCCAGTACAAGAATGTGGTGTTCACGGTGTGGGATGTTGGTGGCCAGGAGAAGCTAAGACCGCTCTGGAAGCACTACTTTAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26264563|gb|CA815626.1|CA815626
EST:     ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTG                         GTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
genomic: ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTGgtacgttagg ... taatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
EST: gi|30296696|gb|CB973490.1|CB973490
EST:     TCCCACAATTG                         GTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
genomic: TCCCACAATTGgtacgttagg ... taatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
EST: gi|71879757|gb|DT028812.1|DT028812
EST:     ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTG                         GTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
genomic: ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTGgtacgttagg ... taatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
EST: gi|71880432|gb|DT029487.1|DT029487
EST:     ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTG                         GTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
genomic: ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTGgtacgttagg ... taatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
EST: gi|71880733|gb|DT029788.1|DT029788
EST:     ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTG                         GTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
genomic: ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTGgtacgttagg ... taatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
EST: gi|71878380|gb|DT027435.1|DT027435
EST:     ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTG                         GTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
genomic: ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTGgtacgttagg ... taatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
EST: gi|71880637|gb|DT029692.1|DT029692
EST:     ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTG                         GTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
genomic: ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTGgtacgttagg ... taatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
EST: gi|30296765|gb|CB973559.1|CB973559
EST:     ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTG                         GTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
genomic: ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTGgtacgttagg ... taatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
EST: gi|294964756|gb|GW838559.1|GW838559
EST:     CTGTACAAATTGCACATTGGAGAAGTCTTGTCCCACTGTTCCCACAATTG                         GTTACAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGAGTGGG
genomic: CTGTACAAATTGCACATTGGAGAAGTTTTGTCC-ACTGTTCCCACAATTGgtacgttagg ... taatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
EST: gi|71877999|gb|DT027054.1|DT027054
EST:     ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTG                         GTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
genomic: ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTGgtacgttagg ... taatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
EST: gi|71880723|gb|DT029778.1|DT029778
EST:     ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTG                         GTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
genomic: ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTGgtacgttagg ... taatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
EST: gi|33409512|gb|CF215139.1|CF215139
EST:     ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTG                         GTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
genomic: ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTGgtacgttagg ... taatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
EST: gi|110729888|gb|EE106340.1|EE106340
EST:     ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTG                         GTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
genomic: ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTGgtacgttagg ... taatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
EST: gi|71878000|gb|DT027055.1|DT027055
EST:     ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTG                         GTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
genomic: ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTGgtacgttagg ... taatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
EST: gi|71879446|gb|DT028501.1|DT028501
EST:     ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTG                         GTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
genomic: ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTGgtacgttagg ... taatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
EST: gi|71879383|gb|DT028438.1|DT028438
EST:     ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTG                         GTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
genomic: ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTGgtacgttagg ... taatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
EST: gi|161707222|gb|FC055589.1|FC055589
EST:     ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTG                         GTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
genomic: ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTGgtacgttagg ... taatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
EST: gi|351036486|gb|FQ457199.1|FQ457199
EST:     ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTG                         GTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
genomic: ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTGgtacgttagg ... taatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
EST: gi|110375930|gb|EC940960.1|EC940960
EST:     ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTG                         GTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG
genomic: ACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTGgtacgttagg ... taatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtcgaatggagcttcagattgattttaattgatcattttctggtaatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGGATGTAGGTGGACAAGAGAAACTCAGGCCACTCTGGAGGCATTACTTTAA
                   attgattttaattgat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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taacagttgatcatattgtacatgtattatactatggatgttgatgtgtcgaatggagcttcagattgattttaattgatcattttctggtaatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGGATGTAGGTGGACAAGAGAAACTCAGGCCACTCTGGAGGCATTACTTTAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - -gtacatg
- - - - - - - - - - - - - - - -ctatgga
- - - - - - - - - - - - - - - - - - - - -tgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - -tggagct