1 5' 3' | 2 5' 3' |
...tcaaatcctgagttggtcaacatgcttgtaagtaaattagtctacacgggcatggtgttgttgagtttcccatttcgtatttttgtatggttattttcagGTTGATGAACTGTGCCGCTGGGCAGACAAAGCTTTTGTTCAACAACGAATTAGCAGTTAAAATAGAAGCTTAAAGAAATTTCTCCCTCACTCTCCTCATC
species | Vitis vinifera |
transcript | Vv16s0039g01840.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGGGATGTGATCTTGTGTTACCATTTGTACATTTGTTTCTTGTCGAGAG GTTGATGAACTGTGCCGCTGGGCAGACAAAGCTTTTGTTCAACAACGAATTEST: gi|34362778|gb|CF404363.1|CF404363
genomic: AGGGGATGTGATCTTGTGTTACCATTTGTACATTTGTTTCTTGTCGAGAGgtaaattttt ... ttattttcagGTTGATGAACTGTGCCGCTGGGCAGACAAAGCTTTTGTTCAACAACGAATT
EST: AGGGGATGTGATCTTGTGTTACCATTTGTACATTTGTTTCTTGTCGAGAG GTTGATGAACTGTGCCGCTGGGCAGACAAAGCTTTTGTTCAACAACGAATTEST: gi|110371425|gb|EC935443.1|EC935443
genomic: AGGGGATGTGATCTTGTGTTACCATTTGTACATTTGTTTCTTGTCGAGAGgtaaattttt ... ttattttcagGTTGATGAACTGTGCCGCTGGGCAGACAAAGCTTTTGTTCAACAACGAATT
EST: AGGGGATGTGATCTTGTGTTACCATTTGTACATTTGTTTCTTGTCGAGAG GTTGATGAACTGTGCCGCTGGGCAGACAAAGCTTTTGTTCAACAACGAATTEST: gi|37190194|gb|CF609543.1|CF609543
genomic: AGGGGATGTGATCTTGTGTTACCATTTGTACATTTGTTTCTTGTCGAGAGgtaaattttt ... ttattttcagGTTGATGAACTGTGCCGCTGGGCAGACAAAGCTTTTGTTCAACAACGAATT
EST: AGGGGATGTGATCTTGTGTTACCATTTGTACATTTGTTTCTTGTCGAGAG GTTGATGAACT
genomic: AGGGGATGTGATCTTGTGTTACCATTTGTACATTTGTTTCTTGTCGAGAGgtaaattttt ... ttattttcagGTTGATGAACT
acgggcatggtgttgttgagtttcccatttcgtatttttgtatggttattttcagGTTGATGAACTGTGCCGCTGGGCAGACAAAGCTTTTGTTCAACAACGAATTAGCAGTTAAAATAGAAGCTTAAAGAAATTTCTCCCTCACTCTCCTCATC
ttattttc CT-rich tract
tatttttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaatcctgagttggtcaacatgcttgtaagtaaattagtctacacgggcatggtgttgttgagtttcccatttcgtatttttgtatggttattttcagGTTGATGAACTGTGCCGCTGGGCAGACAAAGCTTTTGTTCAACAACGAATTAGCAGTTAAAATAGAAGCTTAAAGAAATTTCTCCCTCACTCTCCTCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
-caaatcc
- - - - -gagttgg
- - - - - - - - - -acatgct
- - - - - - - - - - - - - - -aagtaaa
- - - - - - - - - - - - - - - - - - - - -ctacacg
- - - - - - - - - - - - - - - - - - - - - - - - -gcatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgg