Sequence
atgc intronic sequence ATGC exonic sequence...ggtaaaatggaatttgttttatgtattagatgttgtctacaagcagccttcttccccttcacaattttagactggttggtaaccaaaattatatttccagGATTTAAAGAAGTGCAAGAAGAAGAAAAAAGCCAGATGGTTGGTAATGTCTTCACCAGTGTTGCTTCAAGTTACGATCTCATGAATGATTTGATGAGTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0039g01590.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G03210.1 (Glycine max), 3'ss of exon 1
ggtaaaatggaatttgttttatgtattagatgttgtctacaagcagccttcttccccttcacaattttagactggttggtaaccaaaattatatttccagGATTTAAAGAAGTGCAAGAAGAAGAAAAAAGCCAGATGGTTGGTAATGTCTTCACCAGTGTTGCTTCAAGTTACGATCTCATGAATGATTTGATGAGTGG
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------------------------gttcgttttcactctcc-gcattcaaatttcaattcacaattaaaaa-taaatgatattatga--cagaatttcagGGTTCAAACAAGTAAACGAAGATGAGAAGGCTCGCATGGTTGGTGATGTCTTCACGAGTGTTGCTTCAAGCTACGATCTCATGAATGACCTAATGAGTGT
upper sequence: Vv16s0039g01590.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G22890.1 (Glycine max), 3'ss of exon 1
ggtaaaatggaatttgttttatgtattagatgttgtctacaagcagccttcttccccttcacaattttagactggttggtaaccaaaattatatttccagGATTTAAAGAAGTGCAAGAAGAAGAAAAAAGCCAGATGGTTGGTAATGTCTTCACCAGTGTTGCTTCAAGTTACGATCTCATGAATGATTTGATGAGTGG
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------------------------gttcgtttccactctcc-gcattcaaatttcaattcacaattaaaaaataattgacattatga--cataatttcagGGTTCAAACAAGTAAACGAAGAAGAAAAGGCTCGCATGGTTGGTGACGTATTCACGAGCGTTGCTTCAAGCTACGATCTCATGAATGACCTAATGAGTGC
upper sequence: Vv16s0039g01590.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G57300.3 (Arabidopsis thaliana), 3'ss of exon 2
--------------------------ggtaaaatggaatttgtttta----tgtattagatg--ttgtctacaagcagccttcttccccttcacaattt--tagactggttggtaaccaaaattatatttccagGATTTAAAGAAGTGCAAGAAGAAGAAAAAAGCCAGATGGTTGGTAATGTCTTCACCAGTGTTGCTTCAAGTTACGATCTCATGAATGATTTGATGAGTGG
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gtaacattcttgtggatgactttcacaattcaagatcatctgttttgatgctatacgaaatgctttgttttctattatatggcttcttcttgagtttctactgtgtgagtttaacttcaatgttttaatttcagGGTTTCAAGAAGTAAAGGAAGAAGAGAAAAGCAAATTGGTTGGTAATGTATTCACCAATGTAGCTTCGAGTTATGATATTATGAATGATGTGATGAGTGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110709114|gb|EE084301.1|EE084301EST: GCCCATGTTCTCTGCAACTTCTTTGTTGCATTCACATGCCACCAGCTTTG GATTTAAAGAAGTGCAAGAAGAAGAAAAAAGCCAGATGGTTGGTAATGTCT
genomic: GCCCATGTTCTCTGCAACTTCTTTGTTGCATTCACATGCCACCAGCTTTGgtaactctct ... atatttccagGATTTAAAGAAGTGCAAGAAGAAGAAAAAAGCCAGATGGTTGGTAATGTCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gccttcttccccttcacaattttagactggttggtaaccaaaattatatttccagGATTTAAAGAAGTGCAAGAAGAAGAAAAAAGCCAGATGGTTGGTAATGTCTTCACCAGTGTTGCTTCAAGTTACGATCTCATGAATGATTTGATGAGTGG
tggtaac putative branch site (score: 2)
tatttcc putative PPT
taaccaaaattatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggtaaaatggaatttgttttatgtattagatgttgtctacaagcagccttcttccccttcacaattttagactggttggtaaccaaaattatatttccagGATTTAAAGAAGTGCAAGAAGAAGAAAAAAGCCAGATGGTTGGTAATGTCTTCACCAGTGTTGCTTCAAGTTACGATCTCATGAATGATTTGATGAGTGG
ggtaaaa
- - - - - - - - - - - - - - - tgttgtc
- - - - - - - - - - - - - - - - - - - acaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaccaa