1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gagatacattcaattatgatgtctcggttgctgataagaagaagtgtggctccaatgatcttctttaactaactacatactgtcttgatatggtttgtagAACAAAATTGCGTCGGGCAAATGTGAATTTTCTCTCTGCACCTGTTAAGGATGGGACAACGGGGACAGTGATAGTTCTCACGACTCCAGATGCTCAGCGC
species | Vitis vinifera |
transcript | Vv16s0039g01580.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTGCCATGGCAGGCAGCATAGGAAGTGATCCCTTGGGCAGTTTCTACAG AACAAAATTGCGTCGGGCAAATGTGAATTTTCTCTCTGCACCTGTTAAGGAEST: gi|32267415|gb|CD716378.1|CD716378
genomic: GTTGCCATGGCAGGCAGCATAGGAAGTGATCCCTTGGGCAGTTTCTACAGgtgggatctc ... tggtttgtagAACAAAATTGCGTCGGGCAAATGTGAATTTTCTCTCTGCACCTGTTAAGGA
EST: GTTGCCATGGCAGGCAGCATAGGAAGTGATCCCTTGGGCAGTTTCTACAG AACAAAATTGCGTCGGGCAAATGTGAATTTTCTCTCTGCACCTGTTAAGGAEST: gi|30326863|gb|CD010125.1|CD010125
genomic: GTTGCCATGGCAGGCAGCATAGGAAGTGATCCCTTGGGCAGTTTCTACAGgtgggatctc ... tggtttgtagAACAAAATTGCGTCGGGCAAATGTGAATTTTCTCTCTGCACCTGTTAAGGA
EST: GTTGCCATGGCAGGCAGCATAGGAAGTGATCCCTTGGGCAGTTTCTACAG AACAAAATTGCGTCGGGCAAATGTGAATTTTCTCTCTGCACCTGTTAAGGAEST: gi|37188180|gb|CF607529.1|CF607529
genomic: GTTGCCATGGCAGGCAGCATAGGAAGTGATCCCTTGGGCAGTTTCTACAGgtgggatctc ... tggtttgtagAACAAAATTGCGTCGGGCAAATGTGAATTTTCTCTCTGCACCTGTTAAGGA
EST: GTTGCCATGGCAGGCAGCATAGGAAGTGATCCCTTGGGCAGTTTCTACAG AACAAAATTGCGTCGGGCAAATGTGAATTTTCTCTCTGCACCTGTTAAGGAEST: gi|30324410|gb|CD007672.1|CD007672
genomic: GTTGCCATGGCAGGCAGCATAGGAAGTGATCCCTTGGGCAGTTTCTACAGgtgggatctc ... tggtttgtagAACAAAATTGCGTCGGGCAAATGTGAATTTTCTCTCTGCACCTGTTAAGGA
EST: GTTGCCATGGCAGGCAGCATAGGAAGTGATCCCTTGGGCAGTTTCTACAG AACAAAATTGCGTCGGGCAAATGTGAATTTTCTCTCTGCACCTGTTAAGGA
genomic: GTTGCCATGGCAGGCAGCATAGGAAGTGATCCCTTGGGCAGTTTCTACAGgtgggatctc ... tggtttgtagAACAAAATTGCGTCGGGCAAATGTGAATTTTCTCTCTGCACCTGTTAAGGA
gtggctccaatgatcttctttaactaactacatactgtcttgatatggtttgtagAACAAAATTGCGTCGGGCAAATGTGAATTTTCTCTCTGCACCTGTTAAGGATGGGACAACGGGGACAGTGATAGTTCTCACGACTCCAGATGCTCAGCGC
tttaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagatacattcaattatgatgtctcggttgctgataagaagaagtgtggctccaatgatcttctttaactaactacatactgtcttgatatggtttgtagAACAAAATTGCGTCGGGCAAATGTGAATTTTCTCTCTGCACCTGTTAAGGATGGGACAACGGGGACAGTGATAGTTCTCACGACTCCAGATGCTCAGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - cattcaa
- - - - - - - - tgatgtc
- - - - - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - agaagaa
- - - - - - - - - - - - - - - - - - - - - - - - gctccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcttg