1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...catgattaaacgcttttgggccgtggaaatctcttaaaaatcatatttgttttaagtttctgtcatgttagttgctcaaggttttcttttattaatgaagATGTAAGACAGGTAAGCACACAACTGAGAAACCAGTACTAGCAAAGCCAGCTCCTCCAAAGAATCAAGTTCCTGCTCCAGCTCCTGCACCTGATGCATCG
species | Vitis vinifera |
transcript | Vv16s0022g02040.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCTAGCAATTCCAGG ATGTAAGACAGGTAAGCACACAACTGAGAAACCAGTAC-AGGCAAAGCCAG
genomic: TTCTAGCAATTCCAGGgtatgttatg ... attaatgaagATGTAAGACAGGTAAGCACACAACTGAGAAACCAGTACTA-GCAAAGCCAG
tttgttttaagtttctgtcatgttagttgctcaaggttttcttttattaatgaagATGTAAGACAGGTAAGCACACAACTGAGAAACCAGTACTAGCAAAGCCAGCTCCTCCAAAGAATCAAGTTCCTGCTCCAGCTCCTGCACCTGATGCATCG
tattaat putative branch site (score: 2)
ttttcttttatt CT-rich tract
ttttcttttattaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgattaaacgcttttgggccgtggaaatctcttaaaaatcatatttgttttaagtttctgtcatgttagttgctcaaggttttcttttattaatgaagATGTAAGACAGGTAAGCACACAACTGAGAAACCAGTACTAGCAAAGCCAGCTCCTCCAAAGAATCAAGTTCCTGCTCCAGCTCCTGCACCTGATGCATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
catgatt
- - - - - - -ttttggg
- - - - - - - - - - - - ggaaatc
- - - - - - - - - - - - - - - - - -aaaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtcat