Sequence
atgc intronic sequence ATGC exonic sequencegtatttctttcacttgattgctttcaagcttatttccaacccattttctcacgacacatgattaagtctgttgttttttgtttgaatttggcagAGACCTGCAGGGGAATAGATTAACTGGTCAACTCCCAGATGAGATTGGCAACTGTGTTTCTCTTTCAACTTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G27950.1 (Glycine max), 3'ss of exon 2
gtatttctttcacttgattgctttcaa--gcttatttccaacccattttctcacgacacatgattaagtctgttgttttttgtttgaatt----tggcagAGACCTGCAGGGGAATAGATTAACTGGTCAACTCCCAGATGAGATTGGCAACTGTGTTTCTCTTTCAACTTT
|||| | || | | | || || || | | || ||||||| | | | || | || ||||| | || || ||||||||||||||| |||| | ||||||||||| | |||||||| ||||| ||||||| | ||| | |
gtatgtattatatcttttgatttgtaattatttgatcatacacctttttctcttagctcttatttttttaacctgaattttgcatttcttgcaatgacagAGACCTGCAGGGAAATAAACTAACTGGTCAAATTCCAGATGAAATTGGAAACTGTGCTGAACTTATTTATCT
upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G32830.1 (Glycine max), 3'ss of exon 3
gtatttctttcacttgattgctttcaagcttatttccaacccattttctcacgacacatgattaagtctg--ttgttttttgtttgaatttggcagAGACCTGCAGGGGAATAGATTAACTGGTCAACTCCCAGATGAGATTGGCAACTGTGTTTCTCTTTCAACTTT
|||| | || | | | | || | | || || || ||| | || ||| | | || ||||| || | || ||||||||||||||| |||| | ||||||||||| | |||||||| ||||| ||||||| | ||| | |
gtatgtattatatcttttggttt---atttgatcgtacactttttctcttggctcttatttttatatttaacctgaattttgcttt--tctgacagAGACCTGCAGGGAAATAAACTAACTGGTCAAATTCCAGATGAAATTGGAAACTGTGCTGAGCTTATTTATCT
upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G07180.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatttctttcacttgattgctttcaagcttatttccaacccattttctcacgacacatgattaagtctgttgttttttgtttgaatttggcagAGACCTGCAGGGGAATAGATTAACTGGTCAACTCCCAGATGAGATTGGCAACTGTGTTTCTCTTTCAACTTT
|| |||| ||| | |||| | ||| | | | | | || ||| | | | | | | | | |||| ||||||| |||| || |||| ||| ||||||| | |||||||||||||| ||||||||||||||| | | |
--gttcgtttctcttctct-cttttacttgtatgtttgagaagaaacatggtgttaaatccttatgaa-gctctggtctttcttaatt--acagAGACTTGCAAGGAAATAAATTGGGTGGTCAAATTCCAGATGAGATTGGAAACTGTGTTTCTCTTGCTTATGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cccattttctcacgacacatgattaagtctgttgttttttgtttgaatttggcagAGACCTGCAGGGGAATAGATTAACTGGTCAACTCCCAGATGAGATTGGCAACTGTGTTTCTCTTTCAACTTT
ttctcac putative branch site (score: 2)
ttttttgtttgaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatttctttcacttgattgctttcaagcttatttccaacccattttctcacgacacatgattaagtctgttgttttttgtttgaatttggcagAGACCTGCAGGGGAATAGATTAACTGGTCAACTCCCAGATGAGATTGGCAACTGTGTTTCTCTTTCAACTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG