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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggttttagctttggtgctccatctgttctcttgaggaatactagtgttgatactaaactgaagcaattgaaaagttggtgttttggatgtaaatgttttattattgctggctatttagttaattgtttttgggcaattgtagTTTGATTAGGAGAAGGGAGGCTCTTGTGTACAACACTCCTGATGATCACGTAACTCGAGACTTCCGGGAAGGCATTGCCAAATTGGGTGATTTGCGATTT

Basic information

species Vitis vinifera
transcript Vv16s0022g01890.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g01890.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G39960.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaaggttttagctttggtgctccatctgttctcttgaggaatactagtgttgatactaaactgaagcaattgaaaagttggtgttttggatgtaaatgttttattattgctggctatttagttaattgtttttgggcaattgtagTTTGATTAGGAGAAGGGAGGCTCTTGTGTACAACACTCCTGATGATCACGTAACTCGAGACTTCCGGGAAGGCATTGCCAAATTGGGTGATTTGCGATTT
                                                         ||   |        || |   ||    | |  |   |||  | |||  ||||  ||   ||||||| | || | ||   |   || ||| |||||  |||| |||||||||||||| |||||||||||||||||||| || ||  | ||  |  | ||||| ||||| || || ||||||||| | || 
-------------------------------------------------------gttagtttcttctg--tgtacgtttaagatatgtgtcataa--ggtttgatattattgtggatttagtcagttatgtt---gttgtt-tagATTGATCCGGAGGAGGGAGGCTCTTGTTTACAACACTCCTGATGATCATGTGACAAGGGATATAAGAGAAGGGATTGCAAAGTTAGGTGATTTGAGGTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaaatgttttattattgctggctatttagttaattgtttttgggcaattgtagTTTGATTAGGAGAAGGGAGGCTCTTGTGTACAACACTCCTGATGATCACGTAACTCGAGACTTCCGGGAAGGCATTGCCAAATTGGGTGATTTGCGATTT
                             agttaat  putative branch site (score: 4)
                        tatttagttaattgtt  TA-rich tract