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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcatgtgatatggtcgattggaatagccagatatcaagaaaatgtatggtgttgttgaaatgtgaagctagatcatttgaaaagttttcttatttcttgtttcatcttcagGATGCAGTTAGCCGAAAGATCAGCTTTGTGGATTTTGCATTGGCACAAGGATCTCAATGGATTTTTATCACCCCTCATGATATCAG

Basic information

species Vitis vinifera
transcript Vv16s0013g02080.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0013g02080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G025340_T01 (Zea mays), 3'ss of exon 26
gtaagttcatgtgatatggtcgattggaatagccagatatcaagaaaatgtatggtgttgttgaa-atgtgaagctagatcatttgaaaagttttcttatttcttgtttcatcttcagGATGCAGTTAGCCGAAAGATCAGCTTTG---------TGGATTTTGCATTGGCACAAGGATCTCAATGGATTTTTATCACCCCTCATGATATCAG
                        ||   || ||   | |   ||   |||    | |  |||   || | |    ||| ||   ||   | |  ||     | | |    |   |||||||| || ||||| || || ||||| |         | ||||||||  | |||||||| ||||||||||| ||||| |||||||||||||||||
-----------------------gtgagctaacc---ttttgtgaccttgt-cattatctttgtccatttaataacagaaca---gacttggtaactagcgccatatgcatttggcagGATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTCGCACAAGGGTCTCAATGGATATTTATAACCCCTCATGATATCAG

upper sequence: Vv16s0013g02080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G36430.1 (Glycine max), 3'ss of exon 26
--------------------------------------------------------gtaagttcatgtgatatggtcgat-tggaatagccagatatcaagaaaatgtatggtgttgt---------------tgaaatgtgaagct---agatc-atttgaaaagttttct--tat----ttcttgtttcatcttcagGATGCAGTTAGCCGAAAGATCAGCTTTG---------TGGATTTTGCATTGGCACAAGGATCTCAATGGATTTTTATCACCCCTCATGATATCAG
                                                         ||| ||   ||| |||  |   | | |  ||   |   |     ||  |||    |||| |               |   || | ||  |   | |||   |    |||||| ||  |||    ||    ||| |||||||||||||||| |||||||| |||||||| |         | ||||||||   |||||| ||||| || ||||| || || || || |||||||  ||
gtatatttgtttgctacgattaatttagcattttcattgttttgcctttatatagtttaaattatagtgctatattttttgttgcttacatatgcactgcaaagttgtgccttgttttgcctttgttactttgttttatataaaatttagaaatctgctcatgaagtttcctactatgggatttggatttaatcttcagGATGCAGTAAGCCGAAAAATCAGCTTGGACACCCTAGTTGATTTTGCTGAGGCACATGGATCACAGTGGATATTCATTACTCCGCATGATACTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaatgtgaagctagatcatttgaaaagttttcttatttcttgtttcatcttcagGATGCAGTTAGCCGAAAGATCAGCTTTGTGGATTTTGCATTGGCACAAGGATCTCAATGGATTTTTATCACCCCTCATGATATCAG
                            ttttcttatttcttgt  CT-rich tract
                  atttgaaaagttttct  TA-rich tract