1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggatggtaaaccatgttcttttttgttttttttttaaagatttttttttttttaatttgttggtaaataatgaaacttaaaattttattttctgatacagGTTGTGCAGTTATTCTCGTGCTTGGATAAGATAAGCTACATTGAGTGGGCTCTTGATTCAGAATACATACTTTGTGGTCTCTATAAGAGACCAATGATAC
species | Vitis vinifera |
transcript | Vv16s0013g01510.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TATCGCTTATT GTTGTCGCAGTTATTCTCGTGCTTGGATAAGATAAGCTACATTGAGTGGGCEST: gi|110700943|gb|EE078041.1|EE078041
genomic: TATCGCTTAAGgtatttatca ... tctgatacagGTTGT-GCAGTTATTCTCGTGCTTGGATAAGATAAGCTACATTGAGTGGGC
EST: TATCGCTTAAG GTTGTGCAGTTATTCTCGTGCTTGGATAAGATAAGCTACATTGAGTGGGCTEST: gi|161716527|gb|FC065224.1|FC065224
genomic: TATCGCTTAAGgtatttatca ... tctgatacagGTTGTGCAGTTATTCTCGTGCTTGGATAAGATAAGCTACATTGAGTGGGCT
EST: CTGTTGCAGTTGATTATCGTCTTGTGATTAGGGATGTGTTATCGCTTAAG GTTGTGCAGTTATTCTCGTGCTTGGATAAGATAAGCTACATTGAGTGGGCTEST: gi|161718383|gb|FC066306.1|FC066306
genomic: CTGTTGCAGTTGATTATCGTCTTGTGATTAGGGATGTGTTATCGCTTAAGgtatttatca ... tctgatacagGTTGTGCAGTTATTCTCGTGCTTGGATAAGATAAGCTACATTGAGTGGGCT
EST: CTGTTGCAGTTGATTATCGTCTTGTGATTAGGGATGTGTTATCGCTTAAG GTTGTGCAGTTATTCTCGTGCTTGGATAAGATAAGCTACATTGAGTGGGCT
genomic: CTGTTGCAGTTGATTATCGTCTTGTGATTAGGGATGTGTTATCGCTTAAGgtatttatca ... tctgatacagGTTGTGCAGTTATTCTCGTGCTTGGATAAGATAAGCTACATTGAGTGGGCT
ttttttttaatttgttggtaaataatgaaacttaaaattttattttctgatacagGTTGTGCAGTTATTCTCGTGCTTGGATAAGATAAGCTACATTGAGTGGGCTCTTGATTCAGAATACATACTTTGTGGTCTCTATAAGAGACCAATGATAC
ttctgat putative branch site (score: 3)
ttttattttct CT-rich tract
tttaatttgttggtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatggtaaaccatgttcttttttgttttttttttaaagatttttttttttttaatttgttggtaaataatgaaacttaaaattttattttctgatacagGTTGTGCAGTTATTCTCGTGCTTGGATAAGATAAGCTACATTGAGTGGGCTCTTGATTCAGAATACATACTTTGTGGTCTCTATAAGAGACCAATGATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - -aaaccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttaaaa