Sequence
atgc intronic sequence ATGC exonic sequence...taaaaaaaaaaacaccacctaattcttctttcatgatttcaaattttcttaacatttgatttgtcggtcctgatacattattgtttctcctattgttcagTGCTAGTGTATTTGGAGTTTCTGCCCAGTCAATGCAGTGCTCGTATGATCAAAGAGGCAACAGTGTGCCAACTATTCTTCTTATGTTGCAAAAGCGTTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G044495_T01 (Zea mays), 3'ss of exon 1
--taaaaaaaaaaacaccacctaattcttctttcatgatttcaaattttcttaacatttgatttgtcggtcctgatacattattgtttctcctattgttcagTGCTAGTGTATTTGGAGTTTCTGCCCAGTCAATGCAGTGCTCGTATGATCAAAGAGGCAACAGTGTGCCAACTATTCTTCTTATGTTGCAAAAGCGTTTG
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gttgtttgtttttcctcgacgcacgttgaatcctgaacgtccatatttcctgaagcctagctgtatttaggtt--tactgaatggtttatttctgcatacagTGTGAGCGTATTTGGAGTTTCACCAACTTCCATGCAGTGCTCGTATGATAGAAGAGGAAACAGTGTGCCAACTATACTCTTGACTATGCAAAAGAAGTTA
upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G44820.1 (Glycine max), 3'ss of exon 1
taaaaaaaaaaacaccacctaattcttcttt-catgatttcaaattttcttaacatttgatttgtcggtcctgatacattattgtttctcctattgttcagTGCTAGTGTATTTGGAGTTTCTGCCCAGTCAATGCAGTGCTCGTATGATCAAAGAGGCAACAGTGTGCCAACTATTCTTCTTATGTTGCAAAAGCGTTTG
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gagagttgattgctttacctttcactttcatatatgtactaccctcttcctctcttttcatttaaaatctatttttgactga-gttcatatgatcatgcagTGCTAAGGTATTTGGAGTTTCTGCAAAGTCAATGCAGTGCTCTTATGATGAAAGGGGGAACAGTGTCCCAACGATTCTGCTGATGATGCAAAAGCGATTG
upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G42090.1 (Glycine max), 3'ss of exon 1
taaaaaaaaaaacaccacctaattctt-ctttcatgatttcaaattttcttaacatttgatttgtcggtcctgatacattattgtttctcctattgttcagTGCTAGTGTATTTGGAGTTTCTGCCCAGTCAATGCAGTGCTCGTATGATCAAAGAGGCAACAGTGTGCCAACTATTCTTCTTATGTTGCAAAAGCGTTTG
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gggagttgattgctttacctttcactttcatttatgtactaccctcttcctctcttttccttt-taaatccatatttgaatgagttcatatgttcatgcagTGCAAAGGTATTTGGAGTTTCTGCAAAGTCAATGCAGTGCTCTTATGATGAAAGGGGGAACAGTGTCCCAACGATTCTGCTGATGATGCAAAAGCGATTG
upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S256_73V6.1 (Physcomitrella patens), 3'ss of exon 3
taaaaaaaaaaacaccacctaattcttctttcatgatttcaaattttcttaacat-----ttgatttgtcggtcctgatacattattgtttctcctattgtt-cagTGCTAGTGTATTTGGAGTTTCTGCCCAGTCAATGCAGTGCTCGTATGATCAAAGAGGCAACAGTGTGCCAACTATTCTTCTTATGTTGCAAAAGCGTTTG
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-----tgtgtgtttctagctg-tattgagttgagaagctgagtgtacctccagatgattgttggtttgagagattcaacatgtgcatgtttggtcgatgaatgcagCCAGAGTGTATTTGGTGTTTCTGCGGAGTCTATGCAGTGCTCGTATGACCAGAATGGCAACAGTGTTCCGACTATCCTACTACTGATGCAAGAGAGGCTA
upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S13_243V6.1 (Physcomitrella patens), 3'ss of exon 1
taaaaaaaaaaacaccacctaattcttcttt-catgatttcaaattttcttaacatttgatttgtcggtcc--tgatacattattgtttctcctattgttcagTGCTAGTGTATTTGGAGTTTCTGCCCAGTCAATGCAGTGCTCGTATGATCAAAGAGGCAACAGTGTGCCAACTATTCTTCTTATGTTGCAAAAGCGTTTG
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-ttcctagagcgtttgagttaaggaagctgagtgtactcccagatgattgtgg-gtttgagaagtctgacagacgatgtgttggtgttcttgatga-acgcagCCAGAGCGTGTTTGGCGTTTCTGCGGAGTCCATGCAGTGCTCGTATGATCACAACGGCAACAGTGTTCCGACGATCCTACTACTGATGCAAGAGAGATTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713125|gb|FC062483.1|FC062483EST: TTGCCGGTTGAGCTGGAGCCTGAGGTGCCCAGGAGGGTCCCTAGTGCCAG TGCTAGTGTATTTGGAGTTTCTGCCCAGTCAATGCAGTGCTCGTATGATCA
genomic: TTGCCGGTTGAGCTGGAGCCTGAGGTGCCCAGGAGGGTCCCTAGTGCCAGgtttggttct ... tattgttcagTGCTAGTGTATTTGGAGTTTCTGCCCAGTCAATGCAGTGCTCGTATGATCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcttaacatttgatttgtcggtcctgatacattattgtttctcctattgttcagTGCTAGTGTATTTGGAGTTTCTGCCCAGTCAATGCAGTGCTCGTATGATCAAAGAGGCAACAGTGTGCCAACTATTCTTCTTATGTTGCAAAAGCGTTTG
tttctcctattgttc CT-rich tract
atacattattgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaaaaaaaaaacaccacctaattcttctttcatgatttcaaattttcttaacatttgatttgtcggtcctgatacattattgtttctcctattgttcagTGCTAGTGTATTTGGAGTTTCTGCCCAGTCAATGCAGTGCTCGTATGATCAAAGAGGCAACAGTGTGCCAACTATTCTTCTTATGTTGCAAAAGCGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
-aaaaaaa
- - - - - - - ccaccta
- - - - - - - - - - - - - - - -catgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatac