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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atatcatttttccctttattatttctcctttatgccagattgttatctttagaggtgattcatttttctccacctcattgttgtgggttcattttggcagCTGAGAAGGCTCATTATGCTGCTAGAGATCCCCTCACAGCCTTGAAGAAATACATCTTTGACAACAAGCTGGCCAGTGAGGCAGAATTGAAGGCAATAGA

Basic information

species Vitis vinifera
transcript Vv15s0048g02580.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110685114|gb|EE063165.1|EE063165
EST:     TAGGTTTAGAGGACACTCTTTGGCTGATCCTGATGAGCTCCGTGACCCTG                         CTGAGAANGCTCATTATGCTGCTAGAGATCCCATCACAGCCTTGAAGAAAT
genomic: TAGGTTTAGAGGACACTCTTTGGCTGATCCTGATGAGCTCCGTGACCCTGgtaagcagtt ... attttggcagCTGAGAAGGCTCATTATGCTGCTAGAGATCCCCTCACAGCCTTGAAGAAAT
EST: gi|110369802|gb|EC933971.1|EC933971
EST:     TAGGTTTAGAGGACACTCTTTGGCTGATCCTGATGAGCTCCGTGACCCTG                         CTGAGAAGGCTCATTATGCTGCTAGAGATCCCCTCACAGCCTTGAAGAAAT
genomic: TAGGTTTAGAGGACACTCTTTGGCTGATCCTGATGAGCTCCGTGACCCTGgtaagcagtt ... attttggcagCTGAGAAGGCTCATTATGCTGCTAGAGATCCCCTCACAGCCTTGAAGAAAT
EST: gi|34544520|gb|CF512752.1|CF512752
EST:     TAGGTTTAGAGGACACTCTTTGGCTGATCCTGATGAGCTCCGTGACCCTG                         CTGAGAAGGCTCATTATGCTGCTAGAGATCCCCTCACAGCCTTGAAGAAAT
genomic: TAGGTTTAGAGGACACTCTTTGGCTGATCCTGATGAGCTCCGTGACCCTGgtaagcagtt ... attttggcagCTGAGAAGGCTCATTATGCTGCTAGAGATCCCCTCACAGCCTTGAAGAAAT
EST: gi|161706589|gb|FC057207.1|FC057207
EST:     TAGGTTTAGAGGACACTCTTTGGCTGATCCTGATGAGCTCCGTGACCCTG                         CTGAGAAGGCTCATTATGCTGCTAGAGATCCCCTCACAGCCTTGAAGAAAT
genomic: TAGGTTTAGAGGACACTCTTTGGCTGATCCTGATGAGCTCCGTGACCCTGgtaagcagtt ... attttggcagCTGAGAAGGCTCATTATGCTGCTAGAGATCCCCTCACAGCCTTGAAGAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttagaggtgattcatttttctccacctcattgttgtgggttcattttggcagCTGAGAAGGCTCATTATGCTGCTAGAGATCCCCTCACAGCCTTGAAGAAATACATCTTTGACAACAAGCTGGCCAGTGAGGCAGAATTGAAGGCAATAGA
                                          ttcatttt  CT-rich tract
            attcattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atatcatttttccctttattatttctcctttatgccagattgttatctttagaggtgattcatttttctccacctcattgttgtgggttcattttggcagCTGAGAAGGCTCATTATGCTGCTAGAGATCCCCTCACAGCCTTGAAGAAATACATCTTTGACAACAAGCTGGCCAGTGAGGCAGAATTGAAGGCAATAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - -cccttta
- - - - - - - - - - -tttctcc
- - - - - - - - - - - - - - - tatgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgggtt