1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gttggacatgagaagtggtcaagtacttttggtttatttcttttctgttacaattcaattttccatgttgttatttatgctaccaattcttcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGCAGCTTCTGCTTTGATTAAGCTGGGAGTTGTTGGTGGGCTTGGATTGTAT
species | Vitis vinifera |
transcript | Vv15s0048g02350.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCAGACGATCTGATCTCACTGACGAAGCTTTTCCGGAGGAGGCTTCCGG GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGTGGTGGTGCEST: gi|161716355|gb|FC066866.1|FC066866
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
EST: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAG GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGCEST: gi|22013946|gb|BQ798980.1|BQ798980
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
EST: ACCAGACGATCTGATCTCACTGACAAAGCTTTTCCGGAGGAGGCTTCCAG GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGTGGTGGTGCEST: gi|110708454|gb|EE086015.1|EE086015
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
EST: ACCAGACGATCTGATCTCACTGACGAAGCTTTTCCGGAGGAGGCTTCCAG GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGTGGTGGTGCEST: gi|30297423|gb|CB974217.1|CB974217
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
EST: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAG GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGCEST: gi|110720744|gb|EE096932.1|EE096932
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
EST: ACCAGACGATCTGATCTCACTGACGAAGCTTTTCCGGAGGAGGCTTCCAG GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGTGGTGGTGCEST: gi|110699664|gb|EE076859.1|EE076859
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
EST: ACCAGACGATCTGATCTCACTGACGAAGCTTTTCCGGTTGAGGCCCCCAG GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGTGGTGGTGCEST: gi|71862826|gb|DT011881.1|DT011881
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
EST: ACCAGACGATCTGATCTCACTGACGAAGCTTTTCCGGAGGAGGCTTCCAG GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGTGGTGGTGCEST: gi|161720129|gb|FC065124.1|FC065124
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
EST: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAG GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGCEST: gi|110729989|gb|EE106553.1|EE106553
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
EST: ACCAGACGATCTGATCTCACTGACGAAGCTTTTCCGGAGGAGGCTTCCAG GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGTGGTGGTGCEST: gi|110718347|gb|EE095076.1|EE095076
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
EST: ACCAGACGATCTGATCTCACTGACGAAGCTTTTCCGGAGGAGGCTTCCAG GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGTGGTGGTGC
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
tgttacaattcaattttccatgttgttatttatgctaccaattcttcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGCAGCTTCTGCTTTGATTAAGCTGGGAGTTGTTGGTGGGCTTGGATTGTAT
ttcttcctgttc CT-rich tract
atgttgttatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggacatgagaagtggtcaagtacttttggtttatttcttttctgttacaattcaattttccatgttgttatttatgctaccaattcttcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGCAGCTTCTGCTTTGATTAAGCTGGGAGTTGTTGGTGGGCTTGGATTGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - catgaga
- - - - - - - - - tcaagta
- - - - - - - - - - - - -cttttgg
- - - - - - - - - - - - - - - - - - - - - - - - - caattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctacca