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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgagcttgttggttatttattatttgttattcctgatttctttgtaatctatatctttctcctatgtatattgagatcaatagtttcctattgacggtttggtaatttttgcacaacgcagGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATAATTGCAACTACAATAGGTGGTCGCAATGGACAACCAAAACAG

Basic information

species Vitis vinifera
transcript Vv15s0048g02010.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g02010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G08320.1 (Glycine max), 3'ss of exon 2
gtaatgagcttgttggttatttattatttgttattcctgatttctttgtaatctatatctttctcctatgtatattgagatcaatagtttcctattgacggtttggtaatttttgcacaacgcagGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATAATTGCAACTACAATAGGTGGTCGCAATGGACAACCAAAACAG
                   ||| | |||| ||||||     || |  |||   ||||| |    | |     |||| |  |||||   ||   |||||   |     ||||  |||     |||||||  |||  ||||||| |||||||||| ||||||||||||||| || |||||| ||||| | || ||||||||  ||||||||||||| |||
------------------ttttctaatttcttattcaatcattataagta-catatatatgcaacttcctcttattaaattcaatcaatt---attgattttactaaaattgctgctt---gcagGATATAGAAGCTACTGTAGTGAGTGGTAATGGAACAGAAACAGGACAAATAATTACAACTGCCATTGGTGGTCGAGATGGACAACCAAAGCAG

upper sequence: Vv15s0048g02010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G01850.1 (Glycine max), 3'ss of exon 2
gtaatgagcttgttggttatttattatttgttattcctgatttctttgtaatc---tatatctttctcctatgtatattgagatcaatagtttcctattgacggtttggtaatttttgcacaacgcagGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATAATTGCAACTACAATAGGTGGTCGCAATGGACAACCAAAACAG
                      ||     | |    || ||| | || ||| |   || || |      |     |||| |   ||||   ||   |||||   |     ||||  ||||    |||||||  |||  | ||||| |||||||||| |||||||||||||||||| |||||| ||||| | || || |||||  ||||||||||||| |||
----------------------atatgcagctccctctcattacattataagcacatacatgtgcagtttcctcttattaaatccaatcaatt---attgattttactaaaattgctgcat---gcagGATATAGAAGCAACTGTAGTGAGTGGTAATGGAACAGAAACAGGTCAAATAATTACAACTGCCATTGGCGGTCGAGATGGACAACCAAAGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349829752|gb|FQ421270.1|FQ421270
EST:     TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAG                         GATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
genomic: TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAGgtaatgagct ... cacaacgcagGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
EST: gi|349828504|gb|FQ417246.1|FQ417246
EST:     TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAG                         GATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
genomic: TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAGgtaatgagct ... cacaacgcagGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
EST: gi|351029954|gb|FQ430696.1|FQ430696
EST:     TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAG                         GATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
genomic: TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAGgtaatgagct ... cacaacgcagGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
EST: gi|349823414|gb|FQ423225.1|FQ423225
EST:     TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAG                         GATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
genomic: TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAGgtaatgagct ... cacaacgcagGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
EST: gi|351015296|gb|FQ445580.1|FQ445580
EST:     TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAG                         GATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
genomic: TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAGgtaatgagct ... cacaacgcagGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
EST: gi|351015511|gb|FQ447340.1|FQ447340
EST:     TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAG                         GATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
genomic: TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAGgtaatgagct ... cacaacgcagGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
EST: gi|110713030|gb|EE088592.1|EE088592
EST:     TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAG                         GATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
genomic: TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAGgtaatgagct ... cacaacgcagGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
EST: gi|352773646|gb|FQ472428.1|FQ472428
EST:     TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAG                         GATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
genomic: TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAGgtaatgagct ... cacaacgcagGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
EST: gi|349817714|gb|FQ407703.1|FQ407703
EST:     TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAG                         GATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
genomic: TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAGgtaatgagct ... cacaacgcagGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
EST: gi|161713339|gb|FC063356.1|FC063356
EST:     TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAG                         GATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
genomic: TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAGgtaatgagct ... cacaacgcagGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
EST: gi|351027217|gb|FQ444466.1|FQ444466
EST:     TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAG                         GATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
genomic: TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAGgtaatgagct ... cacaacgcagGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
EST: gi|351026191|gb|FQ428203.1|FQ428203
EST:     TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAG                         GATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
genomic: TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAGgtaatgagct ... cacaacgcagGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
EST: gi|110712065|gb|EE089258.1|EE089258
EST:     TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAG                         GATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
genomic: TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAGgtaatgagct ... cacaacgcagGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
EST: gi|351025364|gb|FQ435056.1|FQ435056
EST:     TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAG                         GATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
genomic: TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAGgtaatgagct ... cacaacgcagGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
EST: gi|34548045|gb|CF516277.1|CF516277
EST:     TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAG                         GATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
genomic: TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAGgtaatgagct ... cacaacgcagGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
EST: gi|351021880|gb|FQ437667.1|FQ437667
EST:     TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAG                         GATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA
genomic: TGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAGgtaatgagct ... cacaacgcagGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatattgagatcaatagtttcctattgacggtttggtaatttttgcacaacgcagGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATAATTGCAACTACAATAGGTGGTCGCAATGGACAACCAAAACAG
                      tattgac  putative branch site (score: 2)
                                       tttttgc  putative PPT
                                    taattttt  TA-rich tract