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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttggttatcctaacacgtacaaaagtccgttctgctttctggggatttactggtacaagtgctattttaactgatttgagatttcataccattgaaccacagGAGTATCGGGCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTATGTATGAGACCAAATCAATCCGTGTACCAAGGCCATTTAAG

Basic information

species Vitis vinifera
transcript Vv15s0048g01810.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g01810.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G61080.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatttggttatcctaacacgtacaaaagtccgttctgctttctggggatttactggtacaagtgctattttaactgatttgagatttcataccattgaaccacagGAGTATCGGGCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTATGTATGAGACCAAATCAATCCGTGTACCAAGGCCATTTAAG
                | |   |   | |||          |||  ||  ||  | || ||||    | ||| | || ||||   |||  ||| | ||      |||||||| || ||  | ||||||||||| ||||||||||||||||  ||||||||||| |||| | |||||||||| ||||  |||   || 
--------------gtatattaattgatgtcttactaaacctctctggtattcatagt-caag----acttttaatgttttgttgtttgttac-actggttt-tagGAGTATTGGACCTGCCATGTTTGAGGGAGAGGCTCTTGGTCTTGAGGCTATGTATGAAACCAGAACAATCCGTGTTCCAAATCCACACAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351033360|gb|FQ446592.1|FQ446592
EST:     GCTAGTCGTTATGACACTGATGCTGGTTCTTTCTTCGTTAAAACAAACAG                         GAGTATCGGCCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTAT
genomic: GCTAGTCGTTATGACACTGATGCTGGTTCTTTCTTCGTTAAAACAAACAGgtatttggtt ... tgaaccacagGAGTATCGGGCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTAT
EST: gi|351044742|gb|FQ448996.1|FQ448996
EST:     GCTAGTCGTTATGACACTGATGCTGGTTCTTTCTTCGTTAAAACAAACAG                         GAGTATCGGCCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTAT
genomic: GCTAGTCGTTATGACACTGATGCTGGTTCTTTCTTCGTTAAAACAAACAGgtatttggtt ... tgaaccacagGAGTATCGGGCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTAT
EST: gi|351013105|gb|FQ424810.1|FQ424810
EST:     GCTAGTCGTTATGACACTGATGCTGGTTCTTTCTTCGTTAAAACAAACAG                         GAGTATCGGCCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTAT
genomic: GCTAGTCGTTATGACACTGATGCTGGTTCTTTCTTCGTTAAAACAAACAGgtatttggtt ... tgaaccacagGAGTATCGGGCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTAT
EST: gi|110713565|gb|EE089595.1|EE089595
EST:     GCTAGTCGTTATGAAACTGATGCTGGTTCTTTCTTCATTAAAACAAACAG                         GAGTATCGGGCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTAT
genomic: GCTAGTCGTTATGACACTGATGCTGGTTCTTTCTTCGTTAAAACAAACAGgtatttggtt ... tgaaccacagGAGTATCGGGCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactggtacaagtgctattttaactgatttgagatttcataccattgaaccacagGAGTATCGGGCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTATGTATGAGACCAAATCAATCCGTGTACCAAGGCCATTTAAG
               tattttaactgattt  TA-rich tract