1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taatctctctctgtttgcttaattttattttattttaaaaacttggtgttctatgtgggaacaatacattaagctgtgatttggtcttgaatttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCAAGGATGAGGTCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGT
species | Vitis vinifera |
transcript | Vv15s0048g01290.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGTAGTGAGAGGGAAGGAGCCCEST: gi|77580933|gb|DV219396.1|DV219396
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|110387106|gb|EC951749.1|EC951749
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|34416260|gb|CF415014.1|CF415014
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|352795349|gb|FQ476464.1|FQ476464
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|110692354|gb|EE071504.1|EE071504
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|110391304|gb|EC956269.1|EC956269
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|34415403|gb|CF414157.1|CF414157
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|77582171|gb|DV220047.1|DV220047
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|71876098|gb|DT025153.1|DT025153
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|34319505|gb|CF372259.1|CF372259
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|32249822|gb|CD715641.1|CD715641
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|27584880|gb|CB007575.1|CB007575
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|71871892|gb|DT020947.1|DT020947
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|110686597|gb|EE064413.1|EE064413
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|351043680|gb|FQ431033.1|FQ431033
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGAGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|110406199|gb|EC971762.1|EC971762
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|71871238|gb|DT020293.1|DT020293
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|30330289|gb|CD013551.1|CD013551
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|110686299|gb|EE063779.1|EE063779
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|110384243|gb|EC948668.1|EC948668
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|71872736|gb|DT021791.1|DT021791
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|32265218|gb|CD716807.1|CD716807
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|87585618|gb|DY474262.1|DY474262
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|30329674|gb|CD012936.1|CD012936
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|71870444|gb|DT019499.1|DT019499
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|349826849|gb|FQ418940.1|FQ418940
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|51050834|gb|CO818752.1|CO818752
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|110710456|gb|EE086805.1|EE086805
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCEST: gi|51989993|gb|CV179448.1|CV179448
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
gtgttctatgtgggaacaatacattaagctgtgatttggtcttgaatttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCAAGGATGAGGTCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGT
tttctat CT-rich tract
aatacattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatctctctctgtttgcttaattttattttattttaaaaacttggtgttctatgtgggaacaatacattaagctgtgatttggtcttgaatttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCCAAGGATGAGGTCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - ctctctc
- - - - - -tgtttgc
- - - - - - - - - - - - - - - - - -taaaaac
- - - - - - - - - - - - - - - - - - - - - -tggtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - ctatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaacaa