Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cattatttatggagaatggaaagaggtttttaaattgttatacaaagttcagttatactaaagcagtgttttatattgttcttttttctcaaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG

Basic information

species Vitis vinifera
transcript Vv15s0048g00900.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g00900.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os08g41730.1 (Oryza sativa), 3'ss of exon 1
cattatttatggagaatggaaagaggtttttaaattgttatacaaagttcagttatactaaagcagtgttttatattgtt--cttttttctcaacctt---gcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG
   || | | |  | |       |     |  | |||||  | |    ||  |  |  |    | |  |    |  |  |  | |||  || ||||||     ||||| || ||||||||  ||||||||||||||||||||| |||||| | |||||| |||| | || |  | || | | | |||
---taatcacgacgcagctgcgcataacat--atttgttggaaagctctctctctttttttttctgaataaagtgctaatgccgtttccctaaaccttcaattagAGCGGATAAATGTGTTTTGGCCTCATCTGGATTTCAAGGTGATGTTAAAGCTTTGCAGAGGAACCTTACTGCCAAGGAATTG

upper sequence: Vv15s0048g00900.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G39420.1 (Glycine max), 3'ss of exon 2
cattatttatggagaatggaaagaggtttttaaattgttatacaaagttcagttatactaaagcagtgttttatattgttcttt-tttctcaaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG
  | |    || | || ||| | |  |||||   ||| | |     ||| |   ||   ||   ||  |||| | |  || ||| ||  |   |||  ||| || || || ||||| ||||| |||||||| |||||||||||||| | |||||| ||||||   ||| | |||||||| |||
-ctcagcattgcacaagggacacattttttttgtttggtttgtgttgtttaaggatgtaaagttaggcttttttttatttatttattgtttcgcctgacagGGCTGAGAAGTGTGTGATGGCTTCATCTGGCTTTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33408415|gb|CF214042.1|CF214042
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110701338|gb|EE078798.1|EE078798
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110367163|gb|EC931089.1|EC931089
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110686517|gb|EE064245.1|EE064245
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGAAAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110731955|gb|EE106817.1|EE106817
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGAAAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|351056417|gb|FQ454278.1|FQ454278
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|351040709|gb|FQ438253.1|FQ438253
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|161712237|gb|FC061611.1|FC061611
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGAAAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|351016321|gb|FQ446181.1|FQ446181
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|30133256|gb|CB918595.1|CB918595
EST:     GCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: GCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110708375|gb|EE085848.1|EE085848
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGAAAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|22011829|gb|BQ796863.1|BQ796863
EST:     TCGACCGGCTACAATATCCTCACTCGCGA-TACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110690363|gb|EE067399.1|EE067399
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110722612|gb|EE098996.1|EE098996
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110688266|gb|EE066618.1|EE066618
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110687257|gb|EE064508.1|EE064508
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGAAAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110705826|gb|EE083120.1|EE083120
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|30132002|gb|CB917341.1|CB917341
EST:     GCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: GCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|161705647|gb|FC056192.1|FC056192
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|29784216|gb|CB344664.2|CB344664
EST:     AAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: AAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110701457|gb|EE079053.1|EE079053
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110695795|gb|EE074220.1|EE074220
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGAAAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110379243|gb|EC944426.1|EC944426
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGAAAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110420310|gb|EC986580.1|EC986580
EST:     TCGACGGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|22011827|gb|BQ796861.1|BQ796861
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|28965578|gb|CB344611.1|CB344611
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110385775|gb|EC950328.1|EC950328
EST:     TATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGAAAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110701052|gb|EE078242.1|EE078242
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGAAAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110707254|gb|EE083492.1|EE083492
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110420910|gb|EC987197.1|EC987197
EST:     CGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGCCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: CGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110689903|gb|EE066533.1|EE066533
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110686704|gb|EE064648.1|EE064648
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGAAAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|30131372|gb|CB916711.1|CB916711
EST:     GCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: GCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|30135723|gb|CB921061.1|CB921061
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGAAAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110690981|gb|EE068563.1|EE068563
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|351031033|gb|FQ444860.1|FQ444860
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110701108|gb|EE078347.1|EE078347
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|34415837|gb|CF414591.1|CF414591
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGAAAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110688122|gb|EE066314.1|EE066314
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|33408674|gb|CF214301.1|CF214301
EST:     AAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: AAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110401204|gb|EC967806.1|EC967806
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110398016|gb|EC964077.1|EC964077
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGAAAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|351018518|gb|FQ424625.1|FQ424625
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
EST: gi|110722795|gb|EE099369.1|EE099369
EST:     TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATT                         AGCAGAAAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC
genomic: TCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATCTGCAAATTgtacgcctct ... aaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttcagttatactaaagcagtgttttatattgttcttttttctcaaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG
          tactaaa  putative branch site (score: 1)
                              ttgttcttttttctca  putative PPT
                     tgttttatattgttct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cattatttatggagaatggaaagaggtttttaaattgttatacaaagttcagttatactaaagcagtgttttatattgttcttttttctcaaccttgcagAGCAGACAAATGTGTAATGGCCTCATCTGGATTTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - -ggaaaga
- - - - - - - - - - - - - - - - - - - -atacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaagca