Sequence
atgc intronic sequence ATGC exonic sequence...gtttttcttctgtcctaatggttttgagtatggttgagttggctaaggtttaaatttttatatgggttggtgtccttcacttcattattgttacttccagAATGGTCAATGGACTTCTTAAAACTGCTCAAGGTGTCCCTCCAGGCGTTGCCACTACACTGTTACCACCTCAAGAAGTGACCATGAAACTTGAAGCTATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G02610.1 (Glycine max), 3'ss of exon 2
gtttttcttctgtcctaatggttttgagtatggttgag-ttggctaaggtttaaatttttatatgggttggtgtc-cttcacttcattattgttacttccagAATGGTCAATGGACTTCTTAAAACTGCTCAAGGTGTCCCTCCAGGCGTTGCCACTACACTGTTACCACCTCAAGAAGTGACCATGAAACTTGAAGCTATG
|| ||| | | | | | | | ||| ||| |||| || || | | || |||| || || ||| | |||| || || | || ||||||||||||||||||||||||||||||||||||||||| || || | || ||||| || ||||||||||||| || | |||||||| || |||
gtgtttttcatacaccattcatgct-agtgtggctgaggttatcttgatcgtcacttaatatactctttatagttatttctaattgttat-attcctcctagGATGGTCAATGGACTTCTTAAAACTGCTCAAGGTGTCCCTCCTGGTGTAACGACCACACTTTTGCCACCTCAAGAAGCAACACTAAAACTTGAGGCCATG
upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G45340.1 (Glycine max), 3'ss of exon 2
-gtttttc-ttctgtcctaatggttttgagtatggttgag-ttggctaaggtttaaatttttatatgggttggtgtccttcacttcattattg--ttacttccagAATGGTCAATGGACTTCTTAAAACTGCTCAAGGTGTCCCTCCAGGCGTTGCCACTACACTGTTACCACCTCAAGAAGTGACCATGAAACTTGAAGCTATG
||||||| | | | | || ||| || ||| |||| || || | | | || |||| || | | | | | ||| | || || || ||||||||||||||||||||||||||||||||||||||||| || || || ||||| || ||||||||||||| || | |||||||| || |||
tgtttttcatacagcattcatagtt----gtgtggctgaggctgtcttgattgtcacttaatatactcttta-tattttatatctaattgctatattcctcatagGATGGTCAATGGACTTCTTAAAACTGCTCAAGGTGTCCCTCCTGGTGTAATGACCACACTTTTGCCACCTCAAGAAGCAACATTAAAACTTGAGGCCATG
upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G34560.1 (Glycine max), 3'ss of exon 3
gtttttcttctgtcctaatggttttgagtatggttgag-ttggctaaggtttaaatttttatatgggttggtgtccttcacttcattattgt--tacttccagAATGGTCAATGGACTTCTTAAAACTGCTCAAGGTGTCCCTCCAGGCGTTGCCACTACACTGTTACCACCTCAAGAAGTGACCATGAAACTTGAAGCTATG-
|| ||| |||| || || | | | || |||| || | | | | | ||| || | | || | ||||||||||||||||||||||||||||||||||||||||| || || || ||||| || ||||||||||||| || | |||||||| || |||
---------------------------gtgtggctgaggctgtcttgattgtcacttaatatactcttta-tattttatatctaattgttatattcctcataagATGGTCAATGGACTTCTTAAAACTGCTCAAGGTGTCCCTCCTGGTGTAATGACCACACTTTTGCCACCTCAAGAAGCAACATTAAAACTTGAGGCCATGA
upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G40480.1 (Glycine max), 3'ss of exon 2
---gtttttcttctgtcctaatggttttgagtatggttgag-ttggctaaggtttaaatttttatatgggttggtgtccttcacttcattattg--ttacttccagAATGGTCAATGGACTTCTTAAAACTGCTCAAGGTGTCCCTCCAGGCGTTGCCACTACACTGTTACCACCTCAAGAAGTGACCATGAAACTTGAAGCTATG
|| | || | | | | || || || ||| || | ||| || | | ||||| | || ||| ||| || ||| ||| || ||| || | | | |||||||||||||||||||| |||||||||||||| || | | || ||| | || ||||||||||| | || | ||| |||||| |||
tggattgattttgtactccatttgtgctg-gtgtggatgtgattgtctggattgtcaatttatctactc-----tgtacttattttaattgttgtgttccttatagGACGATAAATGGACTTCTTAAAACTGCCCAAGGTGTCCCTCCTGGTGCAACGACCACAGTTTTGCCACCTCAAGAGGAAACACTAAAATATGAAGCCATG
upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ15473 (Selaginella moellendorffii), 3'ss of exon 2
gtttttcttctgtcctaatggttttgagtatggttgagttggctaaggtttaaatttttatatgggttggtgtccttcacttcattattgttacttcc-agAATGGTCAATGGACTTCTTAAAACTGCTCAAGGTGTCCCTCCAGGCGTTGCCACTACACTGTTACCACCTCAAGAAGTGACCATGAAACTTGAAGCTATG
|| | || || || || |||| || ||| || || | || |||| |||||||| |||||||||||||||||||| ||||| ||||| | | | || || ||||| | | ||||| |||| || |||
-------------------------------------------------gtatgcctcgat-tgaattcaagttcttcgctgataatttgctattttctagGCTGGTAAATGGACTACTTAAAACTGCTCAAGGTGTACCTCCGGGCGTGGAGAGCAGTTTGACTCCTATCCAAGATGCCGCTATGAAGCTTGCTGCAATG
upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ24773 (Selaginella moellendorffii), 3'ss of exon 2
gtttttcttctgtcctaatggttttgagtatggttgagttggctaaggtttaaatttttatatgggttggtgtccttcacttcattattgttacttcc-agAATGGTCAATGGACTTCTTAAAACTGCTCAAGGTGTCCCTCCAGGCGTTGCCACTACACTGTTACCACCTCAAGAAGTGACCATGAAACTTGAAGCTATG
|| | || || || ||| |||| || ||| || || | || |||| |||||||| |||||||||||||||||||| ||||| ||||| | | | || || ||||| | | ||||| |||| || |||
-------------------------------------------------gtatgcctcgat-tgaattcatgttcttcgctgataatttgctattttctagGCTGGTAAATGGACTACTTAAAACTGCTCAAGGTGTACCTCCGGGCGTGGAGAGCAGTTTGACTCCTATCCAAGATGCCGCTATGAAGCTTGCTGCAATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggtttaaatttttatatgggttggtgtccttcacttcattattgttacttccagAATGGTCAATGGACTTCTTAAAACTGCTCAAGGTGTCCCTCCAGGCGTTGCCACTACACTGTTACCACCTCAAGAAGTGACCATGAAACTTGAAGCTATG
ttacttcc CT-rich tract
taaatttttatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttttcttctgtcctaatggttttgagtatggttgagttggctaaggtttaaatttttatatgggttggtgtccttcacttcattattgttacttccagAATGGTCAATGGACTTCTTAAAACTGCTCAAGGTGTCCCTCCAGGCGTTGCCACTACACTGTTACCACCTCAAGAAGTGACCATGAAACTTGAAGCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - cttctgt
- - - - - - -cctaatg
- - - - - - - - - - - - - - - - - -gagttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggttgg