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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttgtgataattgctcttgtgtatttgtttatgtaaatttcatggaaaactaagtgcatttgtttcttctttttgtttttattttttcccagGTGGGAGATGTATACTGAAGATGGACCATCATTGTGTTTGGGTTGTGAATTGTGTTGGGGCTTTGAACTACAAATATTTCCTTCTTTTCTTG

Basic information

species Vitis vinifera
transcript Vv15s0048g00710.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g00710.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ09911 (Selaginella moellendorffii), 3'ss of exon 2
gtgagttttgtgataattgctcttgtgtatttgtttatgtaaatttcatggaaaactaagtgcatttgtttcttctttttgttt-ttattttttcccagGTGGGAGATGTATACTGAAGATGGACCATCATTGTGTTTGGGTTGTGAATTGTGTTGGGGCTTTGAACTACAAATATTTCCTTCTTTTCTTG
                                      |||| |  ||||     | | | || |     ||||    |   ||   | |      |||||||  ||||  | || ||||||||||| || ||||| |||||||| ||||||||||| |||   ||||||||    || || |||||| ||
--------------------------------------gtaagt--catgc----ccatgcgcctcaaactctttcgctaacttgccagtgccatgcagGTGGACGATGCGTCCTCAAGATGGACCACCACTGTGTCTGGGTTGTCAATTGTGTTGGTGCTCGCAACTACAAGGCGTTTCTACTTTTCCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcatggaaaactaagtgcatttgtttcttctttttgtttttattttttcccagGTGGGAGATGTATACTGAAGATGGACCATCATTGTGTTTGGGTTGTGAATTGTGTTGGGGCTTTGAACTACAAATATTTCCTTCTTTTCTTG
                 tgcatttgtttcttct  CT-rich tract
                    atttgtttcttctttt  TA-rich tract