Sequence
atgc intronic sequence ATGC exonic sequence...tttttaattatgggtaaattataatattgttaaggaagtttgttgtgttgtcttcagatttcacttaccctttttgcagtttgattttcttttttggtagATTATAATTTGCTCGAGGAAGTGAAGAGGGTTGCAGAATCTGCGCAGAGAACAAGAGTTAATTTGTGCGGGCATTCTCATTTTAAGATTCCATCCCATCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0048g00080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G27980.1 (Glycine max), 3'ss of exon 1
tttttaat-tatgggtaaattataatattgttaa-ggaagtttgttgtgttgtcttcagatttcacttaccctttttgcagtttgattttcttttttggtagATTATAATTTGCTCGAGGAAGTGAAGAGGGTTGCAGAATCTGCGCAGAGAACAAGAGTTAATTTGTGCGGGCATTCTCATTTTAAGATTCCATCCCATCC
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gtaaaagtgtacacatgcacttggatagttttgttggtggattcttataatctatctatgtctgaatctgtttttatttttgtggatgttcccctgt--tagACTATAAGTTGCTGGAGGAGGTGAAGAGGGTGGCTGAATCTGCTCAGAGAATGAGAAATAAATTGGGCATTTATGCATATTTTAGGTTACCTCGTTACCT
upper sequence: Vv15s0048g00080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G32840.1 (Glycine max), 3'ss of exon 1
tttttaattatgggtaaatt---ataatattgttaaggaagtttgttgtgttgtcttcagatttcacttaccctttttgcagtttgattttcttttttggtagATTATAATTTGCTCGAGGAAGTGAAGAGGGTTGCAGAATCTGCGCAGAGAACAAGAGTTAATTTGTGCGGGCATTCTCATTTTAAGATTCCATCCCATCC
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taaatgtgtacagctgcacttggatagttttgttggtggattcttctaatttatctat-gtctgaatctatgtgtttatttttgtgatgttccctggt--tagACTATAATTTGCTGGAGGAGGTGAAGAGGGTGGCTGAATCTGCTCAAAGAATGAGAAATAAATTGGGCATTTATGCCTATTTTAAGTTACCTCGTTACCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttgtcttcagatttcacttaccctttttgcagtttgattttcttttttggtagATTATAATTTGCTCGAGGAAGTGAAGAGGGTTGCAGAATCTGCGCAGAGAACAAGAGTTAATTTGTGCGGGCATTCTCATTTTAAGATTCCATCCCATCC
tttgattttctttttt CT-rich tract
tttgattttctttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttttaattatgggtaaattataatattgttaaggaagtttgttgtgttgtcttcagatttcacttaccctttttgcagtttgattttcttttttggtagATTATAATTTGCTCGAGGAAGTGAAGAGGGTTGCAGAATCTGCGCAGAGAACAAGAGTTAATTTGTGCGGGCATTCTCATTTTAAGATTCCATCCCATCC
- - - -ttatggg
- - - - - - - - - - - - - - - taaggaa
- - - - - - - - - - - - - - - - - - - - - - -tgttgtc