Sequence
atgc intronic sequence ATGC exonic sequence...aattatgggtgaattataatattgtcaaggaagtttgttgtgttgtcttcatatttcacttaccctttttgcagttttatttatttatttattttggtagATTATAATTTGTTCGAGGAAGTGAAGAGGGTCGCAGAATCTGCTCAGAGAACAAGAATTAATTTGTTTGGGTATTCTCATTTTAAGATTCCATCCCATCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0048g00030.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G27980.1 (Glycine max), 3'ss of exon 1
aattatgggtgaattataatattgtcaaggaagtttgttgtgttgtcttcatatttcacttaccctt---tttgcagttttatttatttat-ttattttggtagATTATAATTTGTTCGAGGAAGTGAAGAGGGTCGCAGAATCTGCTCAGAGAACAAGAATTAATTTGTTTGGGTATTCTCATTTTAAGATTCCATCCCATCT
| | | || | | ||||||| | | ||| | | || | | || || | ||| | || || || |||| ||||| ||| | ||||| ||||||||||| || |||||||||||||||| |||| ||| ||| ||| | |||||| | | || | ||
----gtaaaagtgtacacatgcacttggatagttttgttggtggattcttataatctatctatgtctgaatctgtttttatttttgtggatgttcccctgttagACTATAAGTTGCTGGAGGAGGTGAAGAGGGTGGCTGAATCTGCTCAGAGAATGAGAAATAAATTGGGCATTTATGCATATTTTAGGTTACCTCGTTACCT
upper sequence: Vv15s0048g00030.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G32840.1 (Glycine max), 3'ss of exon 1
aattatgggtgaattataatattgtcaaggaagtttgttgtgttgtcttcatatttcacttaccctt---tttgcagttttatttattt-atttattttggt-agATTATAATTTGTTCGAGGAAGTGAAGAGGGTCGCAGAATCTGCTCAGAGAACAAGAATTAATTTGTTTGGGTATTCTCATTTTAAGATTCCATCCCATCT
| || | | | | ||||||| | | || || | || | | | ||||||| | | || | |||| ||| ||||||||| | ||||| ||||||||||| || ||||||||||| |||| |||| ||| ||| ||| | |||||||| | || | ||
-----taaatgtgtacagctgcacttggatagttttgttggtggattcttctaatttatctatgtctgaatctatgtgtttatttttgtgatgttccctggttagACTATAATTTGCTGGAGGAGGTGAAGAGGGTGGCTGAATCTGCTCAAAGAATGAGAAATAAATTGGGCATTTATGCCTATTTTAAGTTACCTCGTTACCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttcatatttcacttaccctttttgcagttttatttatttatttattttggtagATTATAATTTGTTCGAGGAAGTGAAGAGGGTCGCAGAATCTGCTCAGAGAACAAGAATTAATTTGTTTGGGTATTCTCATTTTAAGATTCCATCCCATCT
cacttac putative branch site (score: 2)
tttatttt putative PPT
tttttgcagttttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aattatgggtgaattataatattgtcaaggaagtttgttgtgttgtcttcatatttcacttaccctttttgcagttttatttatttatttattttggtagATTATAATTTGTTCGAGGAAGTGAAGAGGGTCGCAGAATCTGCTCAGAGAACAAGAATTAATTTGTTTGGGTATTCTCATTTTAAGATTCCATCCCATCT
- ttatggg
- - - - - - - - - - - - -caaggaa
- - - - - - - - - - - - - - - - - - - - tgttgtc