1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcattaaaatcccatgtagagaattatgaactggtccgattgcatggtatttccaaatgccctctgagtgaataaccaagtcttcattttatgtctacagATGTTGCTCTCGCAAATTTGGAAAAAGAAAAGCAGTTGTCTTTTATTAGGGCATGGGAAGAAAGTGAAAAATCGAAAGTAGATAACAA
species | Vitis vinifera |
transcript | Vv15s0046g03180.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACTCCAGATTCTGCAGCCNNNNNNNCTTCAGGAGGATCTTTTGAGAGAG ATGTTGCTCTCGCAAATTTGGAAAAAGAAAAGCAGTTGTCTTTTATTAGGG
genomic: GACTCCAGATTCTGCAGCCAAAAAAACTTCAGGAGGATCTTTTGAGAGAGgtaagaataa ... atgtctacagATGTTGCTCTCGCAAATTTGGAAAAAGAAAAGCAGTTGTCTTTTATTAGGG
ggtatttccaaatgccctctgagtgaataaccaagtcttcattttatgtctacagATGTTGCTCTCGCAAATTTGGAAAAAGAAAAGCAGTTGTCTTTTATTAGGGCATGGGAAGAAAGTGAAAAATCGAAAGTAGATAACAA
gaataac putative branch site (score: 2)
ttcattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattaaaatcccatgtagagaattatgaactggtccgattgcatggtatttccaaatgccctctgagtgaataaccaagtcttcattttatgtctacagATGTTGCTCTCGCAAATTTGGAAAAAGAAAAGCAGTTGTCTTTTATTAGGGCATGGGAAGAAAGTGAAAAATCGAAAGTAGATAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- attaaaa
- - - - - cccatgt
- - - - - - - - - - - - tatgaac
- - - - - - - - - - - - - - - - - - - - -gcatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaccaa