1 5' 3' | 2 5' 3' | 3 5' 3' |
...gacgtcccctttcgctctcatttttcaaccatacctgagaattattacgaatgggatctgaaaatgacacaccctttattttccctgaattgaactgcagATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCAACCATCCCCATCACCGGAACCGGCATCAACCCTGCTAGGAGTCTCGGGG
species | Vitis vinifera |
transcript | Vv15s0046g02410.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCA ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCAEST: gi|351039371|gb|FQ461238.1|FQ461238
genomic: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCAgtaagtattc ... tgaactgcagATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCA ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCAEST: gi|351047812|gb|FQ459032.1|FQ459032
genomic: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCAgtaagtattc ... tgaactgcagATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCA ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCAEST: gi|110702772|gb|EE079034.1|EE079034
genomic: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCAgtaagtattc ... tgaactgcagATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCA ATTTTGGCTCCTCTCCCGATTGGGTTTGCTGTGTTCTTGGTTCATCTGGCAEST: gi|349818459|gb|FQ401073.1|FQ401073
genomic: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCAgtaagtattc ... tgaactgcagATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCA ATTTTGGCTCCTCTCCCGATTGGGTCTGCAGTGTTCTTGGTTCATCTGGC-EST: gi|349814380|gb|FQ398820.1|FQ398820
genomic: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCAgtaagtattc ... tgaactgcagATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCA ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGGCEST: gi|351048846|gb|FQ449714.1|FQ449714
genomic: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCAgtaagtattc ... tgaactgcagATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGG-C
EST: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCA ATTTTGGCTCCTCTCCCGATTGGGTTTGCTGTGTTCTTGGTTCATCTGGCAEST: gi|110699569|gb|EE076680.1|EE076680
genomic: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCAgtaagtattc ... tgaactgcagATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCA ATTTTGGCTCCTCTCCCGATTGGGTTTGCTGTGTTCTTGGTTCATCTGGCAEST: gi|349833149|gb|FQ416527.1|FQ416527
genomic: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCAgtaagtattc ... tgaactgcagATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCA ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCEST: gi|351047271|gb|FQ454882.1|FQ454882
genomic: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCAgtaagtattc ... tgaactgcagATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTC
EST: TCTCTCCTGCA-CTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCA ATTTTGGCTCCTCTCCCCGAT-GGGTTTGCEST: gi|77584848|gb|DV221502.1|DV221502
genomic: TCTCTC-TGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCAgtaagtattc ... tgaactgcagATTTTGGCTCCTCTCCC-GATTGGGTTTGC
EST: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCA ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGEST: gi|351026354|gb|FQ428366.1|FQ428366
genomic: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCAgtaagtattc ... tgaactgcagATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGG
EST: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCA ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCAEST: gi|349811111|gb|FQ406123.1|FQ406123
genomic: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCAgtaagtattc ... tgaactgcagATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCA ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTTGGCEST: gi|351056171|gb|FQ453633.1|FQ453633
genomic: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCAgtaagtattc ... tgaactgcagATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCT-GGC
EST: TTCTCTCTGCAACCGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCA ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCAEST: gi|349829907|gb|FQ422220.1|FQ422220
genomic: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCAgtaagtattc ... tgaactgcagATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCA ATTTTGGCTCTTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCAEST: gi|351012484|gb|FQ427085.1|FQ427085
genomic: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCAgtaagtattc ... tgaactgcagATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCA ATTTTGGCTCCTCTCCCGATTGGGTTTGCTGTGTTCTTGGTTCATCTGGCA
genomic: TTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCAgtaagtattc ... tgaactgcagATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
tacgaatgggatctgaaaatgacacaccctttattttccctgaattgaactgcagATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCAACCATCCCCATCACCGGAACCGGCATCAACCCTGCTAGGAGTCTCGGGG
tttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacgtcccctttcgctctcatttttcaaccatacctgagaattattacgaatgggatctgaaaatgacacaccctttattttccctgaattgaactgcagATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCAACCATCCCCATCACCGGAACCGGCATCAACCCTGCTAGGAGTCTCGGGG
- - - ccctttc
- - - - - - - ctctcat
- - - - - - - - - - - - tcaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatga