Sequence
atgc intronic sequence ATGC exonic sequence...taatttctaggcaaccattctgcagcacgtggttatgcatggtccccactatgcttgtatgattccctttcatatcttttcacatacgagatttttgcagATACGTAGCCATGCGCAAAAGTACTTTTTGAAGGTTCAGAAAAATGGTACAAGTGAACATGTGCCTCCTCCTCGGCCAAAGAGGAAAGCAGCCCATCCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02260.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G03640.1 (Glycine max), 3'ss of exon 2
taatttctaggcaaccattctgcagcacgtggttatgcatggtccccactatgcttgtatgattccctttcatatcttttcacatacgagatt----tttgcagATACGTAGCCATGCGCAAAAGTACTTTTTGAAGGTTCAGAAAAATGGTACAAGTGAACATGTGCCTCCTCCTCGGCCAAAGAGGAAAGCAGCCCATCCAT
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-agtgtttatttcaccaattttct---tgtggtaaatttcttacacttacatgttcttctaactatgcattcttcactgttctatgtaaaattctatttggcagATACGAAGTCATGCACAAAAGTATTTTCTTAAAGTTCAGAAGAATGGAACAAGTGAACATGTACCTCCTCCTCGGCCAAAGAGAAAAGCTGCTCGCCCAT
upper sequence: Vv15s0046g02260.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G07200.1 (Glycine max), 3'ss of exon 2
-taatttctaggcaaccattctgcagcacgtggttatgcatggtccccactatgcttgtatgattccctttcatatcttttcacatacgagatt----tttgcagATACGTAGCCATGCGCAAAAGTACTTTTTGAAGGTTCAGAAAAATGGTACAAGTGAACATGTGCCTCCTCCTCGGCCAAAGAGGAAAGCAGCCCATCCAT
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agtgtttcttt-catcaattttcttgtgctta---atatctgacacttac-atgttcctctaactgtccattcttcactgttctgtgtaaaattctatttggcagATACGAAGTCATGCACAGAAGTATTTTCTTAAAGTTCAGAAGAAGGGAACAAGTGAACATGTACCTCCTCCCCGGCCAAAGAGAAAAGCTGCTCGCCCAT
upper sequence: Vv15s0046g02260.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G47230.1 (Glycine max), 3'ss of exon 2
taatttctaggcaaccattctgcagcacgtggttatgcatggtccccactatgcttgtatg----attccc---tttcatatcttttcacatacgagatttttgcagATACGTAGCCATGCGCAAAAGTACTTTTTGAAGGTTCAGAAAAATGGTACAAGTGAACATGTGCCTCCTCCTCGGCCAAAGAGGAAAGCAGCCCATCCAT
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------atagtaaaatacagtgtagcttttcttt-tccttaatgtatttggtgcttctatacaaaacttcagaattgattgtttgctccccttccactttttggcagATAAGGAGTCATGCACAGAAGTATTTCATGAAAGTTCAGAAGAATGGCACAAGTGAACATGTACCTCCCCCTCGTCCAAAGAGAAAAGCTGCTCATCCCT
upper sequence: Vv15s0046g02260.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G39110.1 (Glycine max), 3'ss of exon 1
taatttctaggcaaccattctgcagcacgtggttatgcatggtccccactatgcttgtatgattccctttcatatcttttcacatacgagatttttgcagATACGTAGCCATGCGCAAAAGTACTTTTTGAAGGTTCAGAAAAATGGTACAAGTGAACATGTGCCTCCTCCTCGGCCAAAGAGGAAAGCAGCCCATCCAT
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----------gtagcttttctttttc---ttaatatatttgatcctt-ctatacaaa-acttcagaattgattgtttgctccccttccactttttggcagATAAGGAGTCATGCACAGAAATATTTCATGAAAATTCAGAAGAATGGCACAAGTGAACATGTACCTCCCCCTCGTCCAAAGAGAAAAGCTGCTCATCCATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690730|gb|EC957082.1|EC957082EST: GAGATTGGAAGAAGATCGAAGCATTTGTTGGGTCCAAAACAGTTATCCAG ATACGTAGCCATGCGCAAAAGTACTTTTTGAAGGTTCAGAAAAATGGTACA
genomic: GAGATTGGAAGAAGATCGAAGCATTTGTTGGGTCCAAAACAGTTATCCAGgtaattttat ... atttttgcagATACGTAGCCATGCGCAAAAGTACTTTTTGAAGGTTCAGAAAAATGGTACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccactatgcttgtatgattccctttcatatcttttcacatacgagatttttgcagATACGTAGCCATGCGCAAAAGTACTTTTTGAAGGTTCAGAAAAATGGTACAAGTGAACATGTGCCTCCTCCTCGGCCAAAGAGGAAAGCAGCCCATCCAT
tttttgc CT-rich tract
atatctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taatttctaggcaaccattctgcagcacgtggttatgcatggtccccactatgcttgtatgattccctttcatatcttttcacatacgagatttttgcagATACGTAGCCATGCGCAAAAGTACTTTTTGAAGGTTCAGAAAAATGGTACAAGTGAACATGTGCCTCCTCCTCGGCCAAAGAGGAAAGCAGCCCATCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - gcaacca
- - - - - - - - - tctgcag
- - - - - - - - - - - - -cacgtgg
- - - - - - - - - - - - - - - - - -tgcatgg
- - - - - - - - - - - - - - - - - - - - - tccccac
- - - - - - - - - - - - - - - - - - - - - - - - - -tgcttgt