Sequence
atgc intronic sequence ATGC exonic sequencegtatttttattttgacatatactttctataaactttttacaagtccccctcccccctatttgctttaacagttaatcagtttcttctgtgcagGGGCATTTCTTGTGAATACGGGGAGCAGTCAGCTGCTGGATGATTGTGCTCTGAAGCAGCTGTTGATTGACGGCACCATTGCTGGCTGTGCTCTGGATGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02250.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G47240.1 (Glycine max), 3'ss of exon 2
gtatttttattttgacatatactttctataaactt---tttacaagtccccctcccccctatttgctttaacag-ttaatca-gtttct----tctgtgcagGGGCATTTCTTGTGAATACGGGGAGCAGTCAGCTGCTGGATGATTGTGCTCTGAAGCAGCTGTTGATTGACGGCACCATTGCTGGCTGTGCTCTGGATGG
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--gtatttacttgatcatatgttatatatttctttgattttgttagttatttgcggttttaattatcttcacaaattcataatgtatctgatgttttcatagGAGCTTTTATTGTAAATACGGGCAGTAGTCAACTTTTGGATGATTGTGCTGTAAAGCAGCTCTTGATTGATGGAACCTTAGCTGGATGTGCTTTGGATGG
upper sequence: Vv15s0046g02250.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G39090.1 (Glycine max), 3'ss of exon 2
gtatttttattttgacat---atactttctataaactttttacaagtccccctcccccctatttgctttaacagttaatca-gtttct----tctgtgcagGGGCATTTCTTGTGAATACGGGGAGCAGTCAGCTGCTGGATGATTGTGCTCTGAAGCAGCTGTTGATTGACGGCACCATTGCTGGCTGTGCTCTGGATGG
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gtatttacttgttcatatgttatatatttctttgattctgt-tagttatttgtggtttgaattatcttcacaaattcataatgtttctaatgttttcatagGAGCTTTTATTGTAAATACGGGCAGTAGTCAACTTTTGGATGATTGTGCTGTAAAGCAGCTCTTGATTGATGGAACCTTAGCTGGATGTGCTTTGGATGG
upper sequence: Vv15s0046g02250.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G01510.1 (Arabidopsis thaliana), 3'ss of exon 2
------gtatttttattt--tgacatat-actttctataaactt---tttac----aagtccccctcccccctatttgctttaacagttaatcagtttcttctgtgcagGGGCATTTCTTGTGAATACGGGGAGCAGTCAGCTGCTGGATGATTGTGCTCTGAAGCAGCTGTTGATTGACGGCACCATTGCTGGCTGTGCTCTGGATGG
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gtatgagttttcttgtcaaatgaaatttgattctccatgaatgtgaattgaagatgaacttctgctttctcgcattcccttcaatt-ctggttgattttatgtat-tagGGGCTTTTCTTGTAAATACTGGAAGCTGCCAGCTGTTGGATGATTGTGCTGTGAAACAACTTCTAATTGATGGCACTATAGCTGGCTGCGCCCTTGACGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acaagtccccctcccccctatttgctttaacagttaatcagtttcttctgtgcagGGGCATTTCTTGTGAATACGGGGAGCAGTCAGCTGCTGGATGATTGTGCTCTGAAGCAGCTGTTGATTGACGGCACCATTGCTGGCTGTGCTCTGGATGG
tttcttctgt CT-rich tract
tttaaca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatttttattttgacatatactttctataaactttttacaagtccccctcccccctatttgctttaacagttaatcagtttcttctgtgcagGGGCATTTCTTGTGAATACGGGGAGCAGTCAGCTGCTGGATGATTGTGCTCTGAAGCAGCTGTTGATTGACGGCACCATTGCTGGCTGTGCTCTGGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT