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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattctttgcataattttttaaaaccttttcttaaaatggtttgttgatctgcatttgtgttcttgaccaacactaagaaaccttccataggattcacagAGTGCACAGGAAATACAGTCCTCAACCCAAGTTTCACATGAGTCCCAAAGTGACCACCAGAACAACACAGCAGAGGCTCCTGTGGCAGACTCAGGTTCAA

Basic information

species Vitis vinifera
transcript Vv15s0046g00990.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g00990.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G46420.2 (Arabidopsis thaliana), 3'ss of exon 2
aattctttgcataattttttaaaaccttttcttaaaatggtttgttgatctgcatttgtgttcttgaccaacactaagaaaccttccataggattcacagAGTGCACAGGAAATACAGTCCTCAACCCAAGTTTCACATGAGTCCCAAAGTGACCACCAGAACAACA---CAGCAGAGGCTCCTGTGGCAGACTCAGGTTCAA------
   | || | ||  ||  ||  ||       |  |  |  |||    ||    ||   |    ||  | |  | | |  ||  |   | ||  ||   | |    ||||||  | ||||| || |||||||||||||||||||||||| |||| ||  |    ||     ||| ||| |||||  |   ||| || |||||        
---tattggtatgcttgattggaaagaaagttgtagctactttagc-attgatatacttagatttaccaagaagtgaagaag-taaaagagagtttgtata----acagGAGTTGCAGTCTTCTACCCAAGTTTCACATGAGTCCCAAGGTGAACAGAAAGTTAATTTATCAGTAGAAGCTCCAATACAAGATTCTGGTTCTGTATCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatctgcatttgtgttcttgaccaacactaagaaaccttccataggattcacagAGTGCACAGGAAATACAGTCCTCAACCCAAGTTTCACATGAGTCCCAAAGTGACCACCAGAACAACACAGCAGAGGCTCCTGTGGCAGACTCAGGTTCAA
                tcttgac  putative branch site (score: 3)
                             taagaaa  TA-rich tract