Sequence
atgc intronic sequence ATGC exonic sequence...gtcattcgtctttgttgcttattagcaagttccagcatgtttagcgatgagttttatctagaacttcttcatctctttgatcaatggtttggacttgcagGGTGCTGTTGAGAGTCTATTGGAGCGCAGTTCACATGTGCAGCTTGCTGATGGATCACTTGTTCCCTTAGATGAACCTTATAGGCAACTGTTGTTGTTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g00040.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G05890.1 (Glycine max), 3'ss of exon 2
-gtcattcgtctt-tgttgcttattagcaagttccagcatgttta-gcgatgagttttatctagaacttcttcatctctttgatcaatggtttggacttgcagGGTGCTGTTGAGAGTCTATTGGAGCGCAGTTCACATGTGCAGCTTGCTGATGGATCACTTGTTCCCTTAGATGAACCTTATAGGCAACTGTTGTTGTTGA
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tgagagttgtttgatattccctattcacaaactgggaccttttcctatgcctggtttcatctagtgctgctatttaagttctaa-agtaatt--gaatcacagGGTGCTGTTGAGAGTTTACTGGAGCGTAGTTCACATGTGCAACTTGCTGATGGATCCTTGGTTCCAATAGATGATCAATGTAGGGAACTACTTCTTCGAA
upper sequence: Vv15s0046g00040.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G02490.1 (Glycine max), 3'ss of exon 4
gtcattcgtctt--tgttgcttattagcaagttccagcatgttta-gcgatgagttttatctagaacttcttcatctctttgatcaatggtt-tggacttgcagGGTGCTGTTGAGAGTCTATTGGAGCGCAGTTCACATGTGCAGCTTGCTGATGGATCACTTGTTCCCTTAGATGAACCTTATAGGCAACTGTTGTTGTTGA
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--gagttgttttgatattccctattcacaaactgggacttttttctatgcctggtttcatctagtgctgctt--tttttaagttcaaaagtaattgaatctcagGGTGCTGTTGAGAGTTTACTGGAGCGTAGTTCACATGTGCAACTTGCTGATGGATCTGTGGTTCCAATAGATGATCAATGCAGGGAACTACTTCTTCAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatgagttttatctagaacttcttcatctctttgatcaatggtttggacttgcagGGTGCTGTTGAGAGTCTATTGGAGCGCAGTTCACATGTGCAGCTTGCTGATGGATCACTTGTTCCCTTAGATGAACCTTATAGGCAACTGTTGTTGTTGA
ctttgat putative branch site (score: 5)
ttttatcta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcattcgtctttgttgcttattagcaagttccagcatgtttagcgatgagttttatctagaacttcttcatctctttgatcaatggtttggacttgcagGGTGCTGTTGAGAGTCTATTGGAGCGCAGTTCACATGTGCAGCTTGCTGATGGATCACTTGTTCCCTTAGATGAACCTTATAGGCAACTGTTGTTGTTGA
gtcattc
- - - - - - tgttgct
- - - - - - - - - - - - - - - - - gcatgtt