Sequence
atgc intronic sequence ATGC exonic sequence...aatttttatggagatactttcatcttttttatacaaatgtttcactagaacatttttattcaattcagaccattgcatataatatcttgctgttttgcagATCTGGCAGAGATAGCTAAGTTTCTGGGTATTACCACCACTGTAGATACAGAAGCGATCCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0024g01470.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G07390.1 (Glycine max), 3'ss of exon 3
aatttttatggagatactttcatcttttttatacaaatgtttcactagaacatttttattcaat--tcagaccattgcatataatatcttgctgt----tttgcagATCTGGCAGAGATAGCTAAGTTTCTGGGTATTACCACCACTGTAGATACAGAAGCGATCCAA
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tctctttttagtggg----tgattatttttaaacaaatctctc--ttgcaccttttgattgtgtcttcttgtagtaacttttcttttcatgatttataatttgcagATTTGGCAGAGATTGCTAAGTTTCTGGGTATTACAACAACTGTAGATACAGATGCCATTCAG
upper sequence: Vv15s0024g01470.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G07310.1 (Glycine max), 3'ss of exon 2
aatttttatggagatactttcatcttttttatacaaatgtttcactagaacatttttattcaat--tcagaccattgcatataatatcttgctgt----tttgcagATCTGGCAGAGATAGCTAAGTTTCTGGGTATTACCACCACTGTAGATACAGAAGCGATCCAA
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tctctttttagtggg----tgattatttttaaacaaatctctc--ttgcaccttttgattgtgtcttcttgtagtaacttttcttttcatgatttataatttgcagATTTGGCTGAGATTGCTAAGTTTCTGGGTATTACAACAACTGTAGATACAGATGCCATTCAG
upper sequence: Vv15s0024g01470.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G29280.1 (Glycine max), 3'ss of exon 3
aatttttatggagatactttcatcttttttatacaaatgtttcactagaacatttttattcaattc-------agaccattgcatataatatcttgctgttttgcagATCTGGCAGAGATAGCTAAGTTTCTGGGTATTACCACCACTGTAGATACAGAAGCGATCCAA
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-----tgaggtagctgcatttgattatttt-taaaaaaatctctcttgcaccttttgattgtgtcttcttgtagtaacttttcttctcatgatttg-taatttgcagATTTAGCAGAGATTGCTAAGTTTTTGGGTATTACAACAACCGTAGATACAGATGCCATCCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110373786|gb|EC938134.1|EC938134EST: GCAAGGGGAAAATGGCATGGATCGAGACGAAGAGACTGCTCGCATCCAAT ATCTGGCAGAGATAGCTAAGTTTCTGGGTATTACCACCACTGTAGATACAG
genomic: GCAAGGGGAAAATGGCATGGATCGAGACGAAGAGACTGCTCGCATCCAATgtaggttccc ... tgttttgcagATCTGGCAGAGATAGCTAAGTTTCTGGGTATTACCACCACTGTAGATACAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagaacatttttattcaattcagaccattgcatataatatcttgctgttttgcagATCTGGCAGAGATAGCTAAGTTTCTGGGTATTACCACCACTGTAGATACAGAAGCGATCCAA
tcttgct CT-rich tract
atttttattcaattca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatttttatggagatactttcatcttttttatacaaatgtttcactagaacatttttattcaattcagaccattgcatataatatcttgctgttttgcagATCTGGCAGAGATAGCTAAGTTTCTGGGTATTACCACCACTGTAGATACAGAAGCGATCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - atacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccattgc