1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtaatatctcatgaatttaaacttagcttatatttgttggcctttttcaccttgtctccatttatctactatattgagacagtgggatactgttttccagGAACAACTTGACCCTTTTTCGCTTGTTGCTGATGAATTATCATTACTTGCTGATAGGTTGCGGTCAATGGTGGTTGCTGAG
species | Vitis vinifera |
transcript | Vv15s0024g00850.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAGTGGTGTTCGGCATCAAATTCATCAGGAGAGCAGCTCCTTAGCTGAA GAACAACTTGACCCTTTTTCACTTGTTGCTGATGAATTATCATTACTTGCTEST: gi|71856386|gb|DT005441.1|DT005441
genomic: TGAGTGGTGTTCGGCATCAAATTCATCAGGAGAGCAGCTCCTTAGCTGAGgtcaggttta ... tgttttccagGAACAACTTGACCCTTTTTCGCTTGTTGCTGATGAATTATCATTACTTGCT
EST: TGAGTGGTGTTCGGCATCAAATTCATCAGGAGAGCAGCTCCTTAGCTGAG GAACAACTTGACCCTTTTTCACTTGTTGCTGATGAATTATCATTACTTGCTEST: gi|71856875|gb|DT005930.1|DT005930
genomic: TGAGTGGTGTTCGGCATCAAATTCATCAGGAGAGCAGCTCCTTAGCTGAGgtcaggttta ... tgttttccagGAACAACTTGACCCTTTTTCGCTTGTTGCTGATGAATTATCATTACTTGCT
EST: TGAGTGGTGTTCGGCATCAAATTCATCAGGAGAGCAGCTCCTTAGCTGAG GAACAACTTGACCCTTTTTCACTTGTTGCTGATGAATTATCATTACTTGCT
genomic: TGAGTGGTGTTCGGCATCAAATTCATCAGGAGAGCAGCTCCTTAGCTGAGgtcaggttta ... tgttttccagGAACAACTTGACCCTTTTTCGCTTGTTGCTGATGAATTATCATTACTTGCT
ttcaccttgtctccatttatctactatattgagacagtgggatactgttttccagGAACAACTTGACCCTTTTTCGCTTGTTGCTGATGAATTATCATTACTTGCTGATAGGTTGCGGTCAATGGTGGTTGCTGAG
ctgttttcc CT-rich tract
atttatctactatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatctcatgaatttaaacttagcttatatttgttggcctttttcaccttgtctccatttatctactatattgagacagtgggatactgttttccagGAACAACTTGACCCTTTTTCGCTTGTTGCTGATGAATTATCATTACTTGCTGATAGGTTGCGGTCAATGGTGGTTGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - -ctcatga
- - - - - - - - - - - - - - - - -ttgttgg