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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtatatcagttgaatatcatcattaaaattcttcatctgacagatacagatagttagttgacaagttttgttgttgttgttgcagAATGATTGGCATTTGGTGAAACAAATGAGTGACACCTATCAATGTGTAGTTCCATGCTTTGGGCTTCATCCTTG

Basic information

species Vitis vinifera
transcript Vv15s0024g00050.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110378329|gb|EC943456.1|EC943456
EST:     CAGCCCTTAATTCTGGCATAAGACATTTTGCTGTTAATGGAGTATCCGAG                         AATGATTGGCATTTGGTGAAACAAATGAGTGACACCTATCAATGTGTAGTT
genomic: CAGCCCTTAATTCTGGCATAAGACATTTTGCTGTTAATGGAGTATCTGAGgtagtatatc ... gttgttgcagAATGATTGGCATTTGGTGAAACAAATGAGTGACACCTATCAATGTGTAGTT
EST: gi|122691575|gb|EC980636.1|EC980636
EST:     CTGGCATAAGACATTTTGCTGTTAATGGAGTATCCGAG                         AATGATTGGCATTTGGTGAAACAAATGAGTGACACCTATCAATGTGTAGTT
genomic: CTGGCATAAGACATTTTGCTGTTAATGGAGTATCTGAGgtagtatatc ... gttgttgcagAATGATTGGCATTTGGTGAAACAAATGAGTGACACCTATCAATGTGTAGTT
EST: gi|110376873|gb|EC941950.1|EC941950
EST:     CAGCCCTTAATTCTGGCATAAGACATTTTGCTGTTAATGGAGTATCTGAG                         AATGATTGGCATTTGGTGAAACAAATGAGTGACACCTATCAATGTGTAGTT
genomic: CAGCCCTTAATTCTGGCATAAGACATTTTGCTGTTAATGGAGTATCTGAGgtagtatatc ... gttgttgcagAATGATTGGCATTTGGTGAAACAAATGAGTGACACCTATCAATGTGTAGTT
EST: gi|161713476|gb|FC063101.1|FC063101
EST:     CAGCCCTTAATTCTGGCATAAGACATTTTGCTGTTAATGGAGTATCCGAG                         AATGATTGGCATTTGGTGAAACAAATGAGTGACACCTATCAATGTGTAGTT
genomic: CAGCCCTTAATTCTGGCATAAGACATTTTGCTGTTAATGGAGTATCTGAGgtagtatatc ... gttgttgcagAATGATTGGCATTTGGTGAAACAAATGAGTGACACCTATCAATGTGTAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcatctgacagatacagatagttagttgacaagttttgttgttgttgttgcagAATGATTGGCATTTGGTGAAACAAATGAGTGACACCTATCAATGTGTAGTTCCATGCTTTGGGCTTCATCCTTG
                   atagtta  TA-rich tract