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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtttaaaattatgacaaactggcccattaatttgataagcatcaagacgatgattctttttactttgattataatgccaaacactattttctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC

Basic information

species Vitis vinifera
transcript Vv15s0021g02480.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 2
tgtttaaaattatgacaaactggcccattaatttgataa--gcatcaagacgatgattctttttactttgatt-ataatgccaaacactattttctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC
  |   |   ||||      ||     || || | | ||  |||    ||  ||   | |  | | ||||  | |   ||        || ||  |  || |||| |||||| |||| ||||| ||||| |  ||||||||  ||||||||||||| |||||||| ||||| ||||| ||||| |   |||||||| ||||||
--tagtatgctatgttgccttgtttgcttcatcttacaattgcagtttgagtatatatgtcctgattttgtctgacgttgtgttgtggtaattcat-cttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 2
tgtttaaaattatgacaaactggcccattaatttgataagcatcaagacgatgattctttttactttgattataatgccaaacactattttctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC-----------------------------
                          |||    |  | ||  | ||  |  |||     || |||   |||| | || |    ||| | |  |  || |||| |||||| | || ||||| |||||||| ||||||||  ||||||||||||| || || || ||||| ||||| ||||| |   |||||||| ||||||                             
-------------------------gattgtacttgtcagtgt-aatgctttgaactagttcact---attaaattgtctctgactctatatttgttcagggttatgttgtttaccgtgtccgtgttagGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCCAGCTCAAGTTCCAGAGGAACAAGAGGTCT

upper sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G084757_T02 (Zea mays), 3'ss of exon 1
-------tgtttaaaattatgacaaactggcccattaatttgataagcatcaagacgatgattctttttactttgattataatgccaaacactattttctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC
       |||       | | |   | ||    | |    |   ||   || ||  | ||   ||   | |   | |   ||  ||      ||||||    || ||||||||||| | || || || ||||| || ||||||||  ||||||||||||| || ||||| ||||| ||||| ||||| |   |||||||| ||||||
aacagcttgtacttgtctgtaatgcattgaattactttgctttgaaaattcgagtagctg---ctgggtgcccgggtctgaa--ccttgtgttatttttg--ttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G034794_T01 (Zea mays), 3'ss of exon 2
---tgtttaaaattatgacaaactggccc-attaatttgataagcatcaagacgatgattctttttactttgattataatgccaaacactattttctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC
    |||| |  ||     | | ||  |  |||    |  | ||  | ||  |  |||     || |||   |||| | || |    ||| | |  |  || |||| |||||| | || ||||| |||||||| ||||||||  ||||||||||||| || || || ||||| ||||| ||||| |   |||||||| ||||||
gatagtttcagttttgagtagaatgaacagattgtacttgtcagtgt-aatgctttgaactagttcact---attaaattgtctctgactctatatttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC

upper sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G302876_T01 (Zea mays), 3'ss of exon 4
tgtttaaaattatgacaaactggcccattaatttgataagcatcaagacgatgattctttttactttgattata----atgccaaacactatt--ttctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC
  ||   | |  |||        ||| | | | || |   |  ||||    ||| |   | |    ||||| ||    |||        |  |  |||   ||||||| |||||||| || | ||| ||||| || | ||||||| ||||||||||| | |||||| | ||||| ||||| ||||| |   |||||||| ||||||
-attaggagtcttgagggt---acccctaattatggtccccgacaagtt--tgagtacctatgtcatgattttatttgatgttgtgttgtggtaattcatctttagGGTTATGTTATGTACCTTGTCCGTGTGAGGCATGGTGGTAGGAAGAGGCCTTTGCCCAAGTGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AC212184.3_FGT010 (Zea mays), 3'ss of exon 1
tgtttaaaattatgacaaactggccca-ttaatttgataagcatcaagacgatgattctttttac--tttgattataatgccaaacactatt--ttctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC
      |   ||||  |  || |   | || |||| || |    ||    ||  |    | | |   ||| ||| | |||  |    ||  |  |||   || || | |||||| | || | ||| ||||| |||||||||||| ||||||||||| | |||||| | ||||| ||||| || || |   |||||||| ||||||
---agtatgctatgttaggcttgtttactttattttattattg-cagtttgagtacctatgtcatgattttatt-tgatgttatgttctggtaattcatcttcagAGTTATGTTGTGTACCTTGTCCGTGTGAGACGTGGTGGTAGGAAGAGGCCTTTGCCCAAGTGTATTGTCTATGGCAATCCAAAGCACCAGGGTATCACCC

upper sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G41620.2 (Glycine max), 3'ss of exon 2
--tgtt-taaaattatgacaaactggcccattaatttgataagcatcaagacgatgattctttttactttgattataatgccaaacactattttc-tattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC
  | || ||  ||| || |||    | |  |    |||  ||||      ||  |    ||| ||  ||| | || ||||   |     ||| |   | |  |||| ||||| || || ||||||||||||||  | ||||| || ||||| || |||||||| || ||||||||||| ||||| ||||||||||| || ||||
agtattgtattattgtgccaagtgtgtctgtc--cttgtaaagctgttgcacatt--cccttgtttgtttcagtacaatgttgattgtgattatgacaatgcagGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCC

upper sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G04870.1 (Glycine max), 3'ss of exon 2
---tgtttaaaattatgacaaactggcccattaatttgata-agcatcaagacgatgattc-tttttactttgattataatgccaaacactattttctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC
     ||    ||||  |  |||||| ||| |    || || || ||    ||  || ||| |||  |  |||||| | ||    | |    | |   |||  |||| ||||| || || |||||||||||  || | ||||| |||||||| || ||||| || || ||||||||||| ||||| || ||||| ||||| || |
tgcctttgtccattactatcaactgggccagt--cctggtagagtatttgcaccttgcttcatttgaatcttgattttgattatgatct---tgtaacattccagGGTTATGTGATTTACCGTGTTCGTGTACGAAGGGGTGGCCGGAAGAGACCAGTTCCAAAAGGTATTGTTTATGGTAAGCCCACCAACCAAGGTGTTACTC

upper sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G16720.1 (Arabidopsis thaliana), 3'ss of exon 2
---tgtttaaaattatgacaaactggcccattaatttgataagcatcaagacgatgattctttttactttgattataatgccaaacactattttctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC
    ||  | || ||||  |   | |     | |||  || |   | ||     |      || |  |   | | || |   | |   |  | |  || | |||| | |||| | || ||||| ||||| ||||||||||| || |||||||| || || ||||| ||||| ||||| ||||| ||||||||||| || || |
gttagtggagaaatatggaagcgttgtttgatgattgaatcatttttaatctagtctcaaattctgttacaaatctagt-tgagatgttgatgt--atgtcagGGCTTTGTTGTGTACCGTGTACGTGTGAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTATTGTGTATGGTAAGCCAACAAACCAGGGAGTGACAC

upper sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 2
-tgtttaaaattatgacaaactggcccattaatttgataagcatcaagacgatgattctttttactttgattataatg-ccaaacactattttctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC
   |  |   || | |    ||||  ||  ||  |  ||  | |      ||||| |  ||     |   |  |  || |    |  |||| ||| | |||||||| |||| |||| |||||||| || ||||||||||| || |||||||| || || ||||| || || || || || || || |||||||| || || |
tgatacattttttttaagccctggatcaaaaaaattgta--cttttgtttgatgagttattcactctctgtgttgctgacttctctttattctctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTATCGTGTACGGTAAACCCACCAACCAGGGAGTGACAC

upper sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S7_364V6.1 (Physcomitrella patens), 3'ss of exon 2
tgtttaaaattatgacaaactggcc--cattaatttgataagcatcaag-acgatgattctttttactttgattataatgccaaacactattttctattt--tagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC
        || |||| ||  ||| |   |||  | |  |    |||||| | | | |   | ||     ||    |  | |  ||||||||  | | | |   |||| || ||  | ||||| || || ||  | || || ||| |||||||||||||| ||||||| ||||| |||||||| ||||  ||||||||| |||| |
-----ttgatgatgaaaatatggtcgatattcgtcttttgtttatcaagtatggtcagagtattagtgatgtacttgttactgaacactatcctgtgtgtgacagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCTGTTGCCAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATCACAC

upper sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S34_445V6.1 (Physcomitrella patens), 3'ss of exon 2
tgtttaaaattatgacaaactggcccattaatttgataagcatca-agacgatgattcttttt-actttgattataatgc-caaacactattttct-attttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC
   | || || | |     |  |   |   ||||  | | |||   |   | ||||||  |   | | | ||| | |      | |  | |  |||  |||||||| |||||  | ||||| || || ||  | ||||| ||  |||||||||| ||| ||||||| ||||| |||||||||||||  ||||| ||| | || |
---tcaacatca-gctcgccaaggttaaatatttacttaacatggtatttgttgattccatgcgattctaattctgacatatcatcgttgtggtcttgttttagGGTTATGTGGTGTATCGCGTCCGCGTGCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCTAAGAACCAAGGTATTACAC

upper sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 2
tgtttaaaattatgacaaactggcccattaatttgataag----catcaagacgatgattctttttactttgattataatgccaaacactattttctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC
   ||| | || | |  | |       |||   ||    |     ||| | | |||   | |   |   | |||| |   |   |  |      || | |  |||| |||||  |||| ||||| |||||  | ||||| ||  |||||||||| ||| ||||||| ||||| ||||||||||| |  ||||||||| | || |
---ttatacttttcagcacccttgttgttagggtgcctggattctatccatatgatatgtttagatgtctagattttcg-gatgataatggacctcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC

upper sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ36722 (Selaginella moellendorffii), 3'ss of exon 2
tgtttaaaattatgacaaactggcccattaatttgataagcatcaagacgatgattctttttactttgattataatgccaaacactattttctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC
                                 | | |    ||    |   |  | |  |  || |  | ||  |  |   | | | |    |    |||| || ||| |||| ||||| |||||  | || || || || |||||||| ||| ||||||| ||||| ||||||||||| |  ||||||||| ||||||
--------------------------------gtaaaatttctcctttcttcgtgtgtgctagctctt-tgatcgtttcgtgctcgaatcctcac---agGGATACGTTGTCTACCGTGTCCGTGTGCGTCGCGGGGGCCGAAAGAGGCCAGTTTCCAAGGGAATTGTCTATGGAAAGCCCAAGAACCAGGGTATCACCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30305539|gb|CB982333.1|CB982333
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|349828916|gb|FQ419249.1|FQ419249
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110687547|gb|EE065083.1|EE065083
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|29783719|gb|CB350095.2|CB350095
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|37188816|gb|CF608165.1|CF608165
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110690582|gb|EE067807.1|EE067807
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|30297287|gb|CB974081.1|CB974081
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110360131|gb|EC922799.1|EC922799
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|351038884|gb|FQ457559.1|FQ457559
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110731428|gb|EE105841.1|EE105841
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110703945|gb|EE081326.1|EE081326
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110384901|gb|EC949369.1|EC949369
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|26265189|gb|CA816252.1|CA816252
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110374851|gb|EC939789.1|EC939789
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110722129|gb|EE098087.1|EE098087
EST:     GCCCACACCGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GCCCACA-CGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110724837|gb|EE101012.1|EE101012
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110732519|gb|EE107877.1|EE107877
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|37188968|gb|CF608317.1|CF608317
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110687793|gb|EE065609.1|EE065609
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110710410|gb|EE086731.1|EE086731
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|30305479|gb|CB982273.1|CB982273
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110688678|gb|EE067502.1|EE067502
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|71875160|gb|DT024215.1|DT024215
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|22008858|gb|BQ793892.1|BQ793892
EST:     TATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: TATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|352785725|gb|FQ475728.1|FQ475728
EST:     GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG                         GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agacgatgattctttttactttgattataatgccaaacactattttctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC
                  ctttgat  putative branch site (score: 5)
                                       ctattttctatttt  putative PPT
        attctttttactttga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtttaaaattatgacaaactggcccattaatttgataagcatcaagacgatgattctttttactttgattataatgccaaacactattttctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC

- - -aaaatta
- - - - - - -gacaaac
- - - - - - - - - - tggccca
- - - - - - - - - - - - - - - - - - - -gcatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaaca