1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcatatgattcctgttttcgcattttttttgtttttattgggagagaaacgaaggagagggtgatttcgagttttctctctgatttttgtgttggatcagATGTCGGAGGGAATCGCACAGTCCTCGCGGTACGTGAAGCTTAAGAAGGATCAGGCGCCAGTGGAGGATATTACGCCCGGAGAGCTCAATCAACCAATTG
species | Vitis vinifera |
transcript | Vv15s0021g02460.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGACTCTCCCCAGATTTCGCCAATTTTTTACGCCTTTCTACTCTTTCAAG ATGTCGGAGGGAATCGCACAGTCCTCGCGGTACGTGAAGCTTAAGAAGGATEST: gi|110712781|gb|EE088125.1|EE088125
genomic: AGACTCTCCCCAGATTTCGTCAATTTTTTAAGCCTTTCTACTCTTTCAAGgtttgtctct ... gttggatcagATGTCGGAGGGAATCGCACAGTCCTCGCGGTACGTGAAGCTTAAGAAGGAT
EST: AGACTCTCCCCAGATTTCGTCAATTTTTTAAGCCTTTCTACTCTTTCAAG ATGTCGGAGGGAATCGCACAGTCCTCGCGGTACGTGAAGCTTAAGAAGGATEST: gi|33404960|gb|CF210587.1|CF210587
genomic: AGACTCTCCCCAGATTTCGTCAATTTTTTAAGCCTTTCTACTCTTTCAAGgtttgtctct ... gttggatcagATGTCGGAGGGAATCGCACAGTCCTCGCGGTACGTGAAGCTTAAGAAGGAT
EST: AGACTCTCCCCAGATTTCGTCAATTTTTTAAGCCTTTCTACTCTTTCAAG ATGTCGGAGGGAATCGCACAGTCCTCGCGGTACGTGAAGCTTAAGAAGGAT
genomic: AGACTCTCCCCAGATTTCGTCAATTTTTTAAGCCTTTCTACTCTTTCAAGgtttgtctct ... gttggatcagATGTCGGAGGGAATCGCACAGTCCTCGCGGTACGTGAAGCTTAAGAAGGAT
gaaacgaaggagagggtgatttcgagttttctctctgatttttgtgttggatcagATGTCGGAGGGAATCGCACAGTCCTCGCGGTACGTGAAGCTTAAGAAGGATCAGGCGCCAGTGGAGGATATTACGCCCGGAGAGCTCAATCAACCAATTG
ctctgat putative branch site (score: 4)
tgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatatgattcctgttttcgcattttttttgtttttattgggagagaaacgaaggagagggtgatttcgagttttctctctgatttttgtgttggatcagATGTCGGAGGGAATCGCACAGTCCTCGCGGTACGTGAAGCTTAAGAAGGATCAGGCGCCAGTGGAGGATATTACGCCCGGAGAGCTCAATCAACCAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - ttcctgt
- - - - - - - - - - - - - - - - - - - - - - - aaacgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gagggtg