1 5' 3' | 2 5' 3' | 3 5' 3' |
...ataattcaggttttacgtactgtttgttttggttttgtgctttgcctcttatggcaacctaatcagcggtttaattttcctttccaacgcctccgtacagATTCCATCTTCTCTCGGAATTCGACAACGGAAAGCGCAGTTGCCGGAAAAGATTGGCCGATCACAACCGCCGCCGCCGAAAGTCGCAGCAACCCATTCAA
species | Vitis vinifera |
transcript | Vv15s0021g02300.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAGTCTTCGCCGCCGGGTTGACTCAGCGCTTCTGCCAACAATGTAGCAG ATTCCATCTTCTCTCGGAATTCGACAACGGAAAGCGCAGTTGCCGGAAAAGEST: gi|110684597|gb|EE062056.1|EE062056
genomic: ACAGTCTTCGCCGCCGGGTTGACTCAGCGCTTCTGCCAACAATGTAGCAGgttctcgcaa ... ctccgtacagATTCCATCTTCTCTCGGAATTCGACAACGGAAAGCGCAGTTGCCGGAAAAG
EST: ACAGTCTTCGCCGCCGGGTTGACTCAGCGCTTCTGCCAACA-TGTAGCAG ATTCCATCTTCTCTCGGA-TTCGACACCGGAA-GCGCEST: gi|110419768|gb|EC986017.1|EC986017
genomic: ACAGTCTTCGCCGCCGGGTTGACTCAGCGCTTCTGCCAACAATGTAGCAGgttctcgcaa ... ctccgtacagATTCCATCTTCTCTCGGAATTCGACAACGGAAAGCGC
EST: ACAGTCTTCGCCGCCGGGTTGACTCAGCGCTTCTGCCAACAATGTAGCAG ATTCCATCTTCTCTCGGAATTCGACAACGGAAAGCGCAGTTGCCGGAAAAG
genomic: ACAGTCTTCGCCGCCGGGTTGACTCAGCGCTTCTGCCAACAATGTAGCAGgttctcgcaa ... ctccgtacagATTCCATCTTCTCTCGGAATTCGACAACGGAAAGCGCAGTTGCCGGAAAAG
ctcttatggcaacctaatcagcggtttaattttcctttccaacgcctccgtacagATTCCATCTTCTCTCGGAATTCGACAACGGAAAGCGCAGTTGCCGGAAAAGATTGGCCGATCACAACCGCCGCCGCCGAAAGTCGCAGCAACCCATTCAA
cgcctcc CT-rich tract
tttaattttccttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataattcaggttttacgtactgtttgttttggttttgtgctttgcctcttatggcaacctaatcagcggtttaattttcctttccaacgcctccgtacagATTCCATCTTCTCTCGGAATTCGACAACGGAAAGCGCAGTTGCCGGAAAAGATTGGCCGATCACAACCGCCGCCGCCGAAAGTCGCAGCAACCCATTCAA
- - - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - -tttgtgc
- - - - - - - - - - - - - - - - - - - - - tgcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aacctaa