Sequence
atgc intronic sequence ATGC exonic sequence...taacttgttagaaaacaagacaaaaatgaaccattaaggttgactgattgctttatatgttatagtgattaaatgaatggttttgtttgtaaccatacagGAAGATGATAGCAATACAGATGCTTTAAAAGTTGGTGTTGGACATGTGGTAGCCAATGCAATAAGACTTCTGATTGCTGGGTCTCAAGCAGGTTGTTTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g01940.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G48080.1 (Glycine max), 3'ss of exon 2
-taacttgttagaaaacaagacaaaaatgaaccattaaggttgactgattgctttatatgttatagtgattaaatga-atggttttgtttgtaaccatacagGAAGATGATAGCAATACAGATGCTTTAAAAGTTGGTGTTGGACATGTGGTAGCCAATGCAATAAGACTTCTGATTGCTGGGTCTCAAGCAGGTTGTTTGA
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ttaagtacttctgttaataatcatgtg-gccctgttgggtgttacttttgtttgtctctgctattgagaggcattaataaagttatgcttctatata-acagGAAGATGATAGCAGTCTTGATGCGTCAAAAGTTACTGCAGGACATGTGGCTGCCAATACGATAAGACTTTTGATTGCAGGGTCCCAGGCAGGTGGATTAA
upper sequence: Vv15s0021g01940.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G38290.1 (Glycine max), 3'ss of exon 2
--ta-acttgttagaaaacaagacaaaa-atgaaccattaaggttgactgattgctttatatgttatagtgattaaatgaatggttttgtttgtaaccatacagGAAGATGATAGCAATACAGATGCTTTAAAAGTTGGTGTTGGACATGTGGTAGCCAATGCAATAAGACTTCTGATTGCTGGGTCTCAAGCAGGTTGTTTGA
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tgtatgcctgttaataatcatgtgaccctgttgggtgttaattttgtttgtctctgctat---tgagaggcattaatatagtcttgatgcttccatata-acagGAAGATGATAGCAGTCTTGATGCGTCAAAAGTTACTGCAGGACATGTGGCTGCCAATACGATAAGACTTTTGATTGCAGGGTCCCAGGCAGGTGGATTAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gattgctttatatgttatagtgattaaatgaatggttttgtttgtaaccatacagGAAGATGATAGCAATACAGATGCTTTAAAAGTTGGTGTTGGACATGTGGTAGCCAATGCAATAAGACTTCTGATTGCTGGGTCTCAAGCAGGTTGTTTGA
ttgtaac putative branch site (score: 2)
tttatatgttatagtg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taacttgttagaaaacaagacaaaaatgaaccattaaggttgactgattgctttatatgttatagtgattaaatgaatggttttgtttgtaaccatacagGAAGATGATAGCAATACAGATGCTTTAAAAGTTGGTGTTGGACATGTGGTAGCCAATGCAATAAGACTTCTGATTGCTGGGTCTCAAGCAGGTTGTTTGA
- - - - - -aaaacaa
- - - - - - - - - -acaaaaa
- - - - - - - - - - - -aaatgaa
- - - - - - - - - - - - - - - ccattaa
- - - - - - - - - - - - - - - - - - - - tgactga