Sequence
atgc intronic sequence ATGC exonic sequence...gcttcctgtattttctttgcagccaaacagaactataaatctctttctcagatttgttttattatagaaatgaagagaaattgattgaaggttattgcagTCTGCTAATTGGATAGTGGTGCATAGAGCTATGATGGCAATAAAAGATGTGGATTCATTGTTCTCTTCTTTGGATCCTGAGTACTATGATATCCTCATGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g01870.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G26690.1 (Glycine max), 3'ss of exon 2
----gcttcctgtattttctttgcagccaaacagaactata--aatctctttctcagatttgttttattatagaaatgaagagaaattgattgaaggttattgcagTCTGCTAATTGGATAGTGGTGCATAGAGCTATGATGGCAATAAAAGATGTGGATTCATTGTTCTCTTCTTTGGATCCTGAGTACTATGATATCCTCATGA
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actagcaaagactattctttttgttac-atgtataattgtagtaatgaagttttgtaatttgttgttaacttgatattatctgttttctattttcgg-----acagTCGGCACACTGGCTTGTGGTGCACAGAGCTATAATGGCTATAAAAGATGTGGATGGGATGCTTTCTTCCTTGGATCCTGAGTACTATGATATCCTAATGA
upper sequence: Vv15s0021g01870.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G14260.1 (Glycine max), 3'ss of exon 2
-gcttcctgtattttctttgcagccaaacagaactataaatctctttctcagatttgttttattatagaaatgaagagaaattgattgaaggttattgcagTCTGCTAATTGGATAGTGGTGCATAGAGCTATGATGGCAATAAAAGATGTGGATTCATTGTTCTCTTCTTTGGATCCTGAGTACTATGATATCCTCATGA
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tctatagactattctttttgttac-atgtacaactgtgtagtaattgaagttttgtaatttgttgttaacttggtattatctgttttctatttttggacagTCGGCTCACTGGCTTGTGGTGCACAGAGCTATAATGGCTATAAAAGATGTGGATGGGATGCTTTCTTCCTTGGATCCTGAGTACTATGATATCCTAATGA
upper sequence: Vv15s0021g01870.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G65274.1 (Arabidopsis thaliana), 3'ss of exon 2
gcttcctgtattttctttgcagccaaacagaactataaatctctttctca-gatttgttttattatagaaatgaagagaaattgattgaaggttattgcagTCTGCTAATTGGATAGTGGTGCATAGAGCTATGATGGCAATAAAAGATGTGGATTCATTGTTCTCTTCTTTGGATCCTGAGTACTATGATATCCTCATGA
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--gtcctactgtttcct--ctaccatgca----cataagtagtttgttcatgatcaaaaagattgtgtaatttatgataaatatctgtgaa---attgcagTCAGCTAATTGGATAGTTGTGCACAGAGCTATCATGGCGATAAAGGATATCGAAGGAATGTTAAATTCTCTTACTGCCGAGTATTACGACATTCTCATGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctcagatttgttttattatagaaatgaagagaaattgattgaaggttattgcagTCTGCTAATTGGATAGTGGTGCATAGAGCTATGATGGCAATAAAAGATGTGGATTCATTGTTCTCTTCTTTGGATCCTGAGTACTATGATATCCTCATGA
aattgat putative branch site (score: 4)
atttgttttattatag TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcttcctgtattttctttgcagccaaacagaactataaatctctttctcagatttgttttattatagaaatgaagagaaattgattgaaggttattgcagTCTGCTAATTGGATAGTGGTGCATAGAGCTATGATGGCAATAAAAGATGTGGATTCATTGTTCTCTTCTTTGGATCCTGAGTACTATGATATCCTCATGA
- ttcctgt
- - - - - - - ctttgca
- - - - - - - - - - - ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattga