Sequence
atgc intronic sequence ATGC exonic sequence...tcccactttttaaaaccttagtcatactgttttcaactttttcatttcgttgtttttcaagcaaagcagtaatgatcaatgtttatactattgcctgcagGTTTTATGCTGCAGAGGTTCTATTAGCACTTGAGTATCTCCACATGCTTGGAGTTGTCTACCGGGATTTGAAACCAGAAAATGTTTTAGTCCGTGATGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g01540.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os04g46180.2 (Oryza sativa), 3'ss of exon 3
---tcccactttttaaaaccttagtcatactgttttcaactttttcatttcgttgtttttcaagcaaagcagtaatgatcaatgtttatactattgcctgcagGTTTTATGCTGCAGAGGTTCTATTAGCACTTGAGTATCTCCACATGCTTGGAGTTGTCTACCGGGATTTGAAACCAGAAAATGTTTTAGTCCGTGATGAT
| | || || ||||| | | | | ||||| || | | | || |||| ||| || || | | ||| | ||||||||||||||||||| || || |||| || |||||||| |||||| | |||||||| ||| ||||| |||| ||||| || ||| | || |||||||||
agttttttaactctataatgttagtt-tgccatactgaacttgaacagcttatacctggccattgctagcactaac-atttatatgc-tctgattccgagcagGTTTTATGCTGCAGAAGTACTTCTAGCTCTGGAGTATCTACACATGTTGGGAGTTGTTTACAGGGATCTGAAGCCAGAGAACGTTCTTGTTCGTGATGAT
upper sequence: Vv15s0021g01540.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G37810.1 (Glycine max), 3'ss of exon 2
------tcccactttttaaaaccttagtcatactgttttcaactttttcatttcgttgtttttcaagcaaagcagtaatgatcaatgtttatactattgcctgcagGTTTTATGCTGCAGAGGTTCTATTAGCACTTGAGTATCTCCACATGCTTGGAGTTGTCTACCGGGATTTGAAACCAGAAAATGTTTTAGTCCGTGATGAT
|||| || | | | | ||| | | | |||| || ||| |||| || ||| | | | | || || || || || ||||||||||||||||| || || |||||||| ||||| ||||||||||||||||| || || || | ||||| ||||| || | ||||| ||||||
atacaaatatgtatttttctacatagatggtg-tatttgggaaaatgtaattt--ttctttcccaagtcaacttctaa--aatacttgtcattct-ctgtatgtagCTTTTATGCTGCAGAGGTCCTGTTGGCACTTGAATATCTTCACATGCTTGGAGTTGTGTATCGAGACCTTAAACCTGAAAACGTACTGGTCCGAGATGAT
upper sequence: Vv15s0021g01540.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G48670.1 (Glycine max), 3'ss of exon 2
tcccactttttaaaaccttagtcatactgt---tttcaactttttcatttcgttgtttttcaagcaaagcagtaatgatcaatgtttatactattgcctgcagGTTTTATGCTGCAGAGGTTCTATTAGCACTTGAGTATCTCCACATGCTTGGAGTTGTCTACCGGGATTTGAAACCAGAAAATGTTTTAGTCCGTGATGAT-
| | | | ||| || | | || ||| | | || |||||| || | ||| | ||| || | || || || || || ||||||||||||||||| || || |||||||| ||||| |||||||||||||| || || || || | ||||| |||||||| | ||||| ||||||
gacaaatatgtaattttctacatacatggtgtgttttggaaaatgtacttt-ttgtttcccatgtcaagtaataaaattc--ttgccattct-ctgtatgtagcTTTTATGCTGCAGAGGTCCTGTTGGCACTTGAATATCTTCACATGCTTGGAGTCGTGTATCGAGACCTTAAACCTGAAAATGTACTGGTCCGAGATGATG
upper sequence: Vv15s0021g01540.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G13960.1 (Glycine max), 3'ss of exon 2
tcccactttttaaaaccttagtcatactgttttcaactttttcatttcgttgtttttcaagcaaa-gcagtaatgatcaatgtttatactat---tgcctgcagGTTTTATGCTGCAGAGGTTCTATTAGCACTTGAGTATCTCCACATGCTTGGAGTTGTCTACCGGGATTTGAAACCAGAAAATGTTTTAGTCCGTGATGAT
| | || | |||| | ||| || | | |||| || ||| || ||| ||| ||| | ||| | | | | | | || ||||||||||| ||||| || | || ||||||||||| ||||||||||||||||| || | || | ||||| |||||||| || ||||| ||||||
-tgatcatcttgttctccatatcatgcc-tttgcacttgatacatt--attatttggcacccaatcatcataacgatttacattttcattttctctacatatagCTTTTATGCTGCGGAGGTCCTGCTTGCTCTTGAGTATCTTCACATGCTTGGAGTTGTGTATAGAGACCTCAAACCTGAAAATGTGTTGGTCCGAGATGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcgttgtttttcaagcaaagcagtaatgatcaatgtttatactattgcctgcagGTTTTATGCTGCAGAGGTTCTATTAGCACTTGAGTATCTCCACATGCTTGGAGTTGTCTACCGGGATTTGAAACCAGAAAATGTTTTAGTCCGTGATGAT
aatgtttatactatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcccactttttaaaaccttagtcatactgttttcaactttttcatttcgttgtttttcaagcaaagcagtaatgatcaatgtttatactattgcctgcagGTTTTATGCTGCAGAGGTTCTATTAGCACTTGAGTATCTCCACATGCTTGGAGTTGTCTACCGGGATTTGAAACCAGAAAATGTTTTAGTCCGTGATGAT
tcccact
- - - - - taaaacc
- - - - - - - - - - - catactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgtt