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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagcctacttgcgcctttgttatactttcttttcagaagtgtgttccaattcttgaaacatttcatataatttctcagGAAAATGTTAAATACCTTCCTGGTATAAAGCTTGGCAAAAATGTTGTTGCGGACCCAGACCTTGAACACGCAG

Basic information

species Vitis vinifera
transcript Vv14s0219g00280.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0219g00280.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G24070.1 (Glycine max), 3'ss of exon 3
------------------------------gtaaagcctacttgcgcctttgtta----tactttcttttcagaagtgtgttccaattcttgaaacatt-tcatataatttctcagGAAAATGTTAAATACCTTCCTGGTATAAAGCTTGGCAAAAATGTTGTTGCGGACCCAGACCTTGAACACGCAG
                                | |  ||| ||     |  || |    |||  |  ||| |            ||    |  |||||     | |  |||  ||||||||||| ||||| |||||||| || ||||||||||||||||||||||| || ||||||||||||   ||||
gtaaggactagctattcatttcattatcaatgagattctatttttttttcagtgaatattaccattattttaaccacaccaagaaagaaattgaacatcactgtttcttttggcagGAAAATGTCAAATATCTTCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCAGATCCAGACCTTGAAAGTGCAG

upper sequence: Vv14s0219g00280.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G07410.1 (Glycine max), 3'ss of exon 2
-----------------------------gtaaagc-ctacttgcgcctttgttatactttcttttcagaagtgtgttccaattcttgaa---acatt-tcatataatttctcagGAAAATGTTAAATACCTTCCTGGTATAAAGCTTGGCAAAAATGTTGTTGCGGACCCAGACCTTGAACACGCAG
                              | |    | | ||     |  || |   || |   |   |    ||| ||||      ||   ||||    || |  |||  ||||||||||| ||||| || ||||| || ||||||||||||||||||||||| || ||||||||||||   || |
gtaaggactagccattcatttcatttccaatgagtttccaattttttttcagtgaatattaccactattataactgtaccaagaaagaaatgaacatcactatttcttttggcagGAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCAGATCCAGACCTTGAAAGTGCCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttcttttcagaagtgtgttccaattcttgaaacatttcatataatttctcagGAAAATGTTAAATACCTTCCTGGTATAAAGCTTGGCAAAAATGTTGTTGCGGACCCAGACCTTGAACACGCAG
                                               tttctc  CT-rich tract
                             ttgaaacatttcatat  TA-rich tract