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...ttcctccgtctctcctcatgtttggcagattttccatctttatttaaagaccttttcttttgccaaactttctaaaatatttgatgtgggtattctgtagGATTCTTTTTACCGTGGCTTGACTGCTGAAGAATCAGAACGTGTACATGAGTATAATTTTGATCATCCTG
species | Vitis vinifera |
transcript | Vv14s0171g00090.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACATGATCATTCAACAACTCCATGATCACCGAGTTGTGCTTGTCAACCAG GATTCTTTTTACCGTGGCTTGACTGCTGACGAATCAGAACGTGTACATGAGEST: gi|83274960|gb|DV939056.1|DV939056
genomic: ACATGATCATTCAACAACTCCATGATCACCGAGTTGTGCTTGTCAACCAGgtatgctgga ... tattctgtagGATTCTTTTTACCGTGGCTTGACTGCTGAAGAATCAGAACGTGTACATGAG
EST: ACATGATCATTCAACAACTCCATGATCACCGAGTTGTGCTTGTCAACCAG GATTCTTTTTACCGTGGCTTGACTGCTGAAGAATCAGAACGTGTACATGAGEST: gi|46917774|gb|CN547103.1|CN547103
genomic: ACATGATCATTCAACAACTCCATGATCACCGAGTTGTGCTTGTCAACCAGgtatgctgga ... tattctgtagGATTCTTTTTACCGTGGCTTGACTGCTGAAGAATCAGAACGTGTACATGAG
EST: ACATGATCATTCAACAACTCCATGATCACCGAGTTGTGCTTGTCAACCAG GATTCTTTTTACCGTGGCTTGACTGCTGAAGAATCAGAACGTGTACATGAG
genomic: ACATGATCATTCAACAACTCCATGATCACCGAGTTGTGCTTGTCAACCAGgtatgctgga ... tattctgtagGATTCTTTTTACCGTGGCTTGACTGCTGAAGAATCAGAACGTGTACATGAG
aaagaccttttcttttgccaaactttctaaaatatttgatgtgggtattctgtagGATTCTTTTTACCGTGGCTTGACTGCTGAAGAATCAGAACGTGTACATGAGTATAATTTTGATCATCCTG
aaactttctaaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcctccgtctctcctcatgtttggcagattttccatctttatttaaagaccttttcttttgccaaactttctaaaatatttgatgtgggtattctgtagGATTCTTTTTACCGTGGCTTGACTGCTGAAGAATCAGAACGTGTACATGAGTATAATTTTGATCATCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
ttcctcc
- - - - -ctctcct
- - - - - - - - - tgtttgg
- - - - - - - - - - - - - - - - -ccatctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtg