Sequence
atgc intronic sequence ATGC exonic sequencegtaaattttgtctttttcttatcctgtagatgttatttttagattgataatgcccgtttgattagttttttttttctttggtggaaatattatttgtgttgttatttaagccaattcctcatggtgatggtgctgcagCAGAGGCTAGTTAGAGATTTTTACAAGATCCTCAATCAAGTGAACACTGAGGAACTCCCAGATGGTCTAAAGCTTCCAGATACATTCAGTCAACTTGTTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0108g01520.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G03460.1 (Glycine max), 3'ss of exon 2
gtaaattttgtctttttcttatcctgtagatgttatttttag-attgataatgcccgtttgattagttttttttttctttggtggaaatattatttgt--gttgttatttaagccaat-tcctcatggtgatggtgctgcagCAGAGGCTAGTTAGAGATTTTTACAAGATCCTCAATCAAGTGAACACTGAGGAACTCCCAGATGGTCTAAAGCTTCCAGATACATTCAGTCAACTTGTTT
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-------------------------gtaaataatttttttgttacttcaaatagatatctgatta-----tgtcatatctactaaagatttgattaattaactattatctgaacctttcttgtgatgattgtaatgttgcagCAGAGACTAGTTAGAGATTTTTACAATATCCTTAACGAAGTAAAGACTAGGGAAATTCCATCTGCTCTAGAGCTTCCGGATTCATTTGATCAACTGGTTT
upper sequence: Vv14s0108g01520.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G01040.2 (Arabidopsis thaliana), 3'ss of exon 2
gtaaattttgtctttttcttatcctgtagatgttatttttagattgataatgcccgtttgattagttttttttttctttggtggaaatattatttgtgttgttatttaagccaattcctcatggtgatggtgctgcagCAGAGGCTAGTTAGAGATTTTTACAAGATCCTCAATCAAGTGAACACTGAGGAACTCCCAGATGGTCTAAAGCTTCCAGATACATTCAGTCAACTTGTTT---
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-------------------------gtgagtg--attgcttcttttcaggtgtttgaattatgatctaaaactctctgtatcagta----tgtttaagtccggatttcttttcttttcacacgttc----tgttgcagcagAGACTAGTTAGAGATTTTTACAAAATTCTAAATGAAGTAAGCACTCAAGAAATTCCAGATGGTTTAAAGCTTCCAGAGTCTTTTAGTCAACTGGTTTCGG
upper sequence: Vv14s0108g01520.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G01040.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaaattttgtctttttcttatcctgtagatgttatttttagattgataatgcccgtttgattagttttttttttctttggtggaaatattatttgtgttgttatttaagccaattcctcatggtgatggtgctgcagCAGAGGCTAGTTAGAGATTTTTACAAGATCCTCAATCAAGTGAACACTGAGGAACTCCCAGATGGTCTAAAGCTTCCAGATACATTCAGTCAACTTGTTT
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-------------------------gtgagtg--attgcttcttttcaggtgtttgaattatgatctaaaactctctgtatcagta----tgtttaagtccggatttcttttcttttcacacgttc----tgttgcagCAGAGACTAGTTAGAGATTTTTACAAAATTCTAAATGAAGTAAGCACTCAAGAAATTCCAGATGGTTTAAAGCTTCCAGAGTCTTTTAGTCAACTGGTTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaaatattatttgtgttgttatttaagccaattcctcatggtgatggtgctgcagCAGAGGCTAGTTAGAGATTTTTACAAGATCCTCAATCAAGTGAACACTGAGGAACTCCCAGATGGTCTAAAGCTTCCAGATACATTCAGTCAACTTGTTT
attatttgtgttgtta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaattttgtctttttcttatcctgtagatgttatttttagattgataatgcccgtttgattagttttttttttctttggtggaaatattatttgtgttgttatttaagccaattcctcatggtgatggtgctgcagCAGAGGCTAGTTAGAGATTTTTACAAGATCCTCAATCAAGTGAACACTGAGGAACTCCCAGATGGTCTAAAGCTTCCAGATACATTCAGTCAACTTGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG