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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaattcctgtttcccacttaagttgcttctccacctgagggaaaaatgcttttgtttctcaacttactttcttggcatgtgatgttctcagAGTTTGGAGCCATGGCTTGTCAGTGAAGTAAGGATATCTGGAGACATAAAGTTGATCTCTGTAGTGGCCAGTGGGTTACCCACATCAGAAGATCTTGAAC

Basic information

species Vitis vinifera
transcript Vv14s0108g00890.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0108g00890.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G05860.1 (Glycine max), 3'ss of exon 3
gtaacaattcctgtttcccactta-agttgcttctccacctgagggaaaaatgcttttgtttctca----acttactttcttggcatgtgatgttctcagAGTTTGGAGCCATGGCTTGTCAGTGAAGTAAGGATATCTGGAGACATAAAGTTGATCTCTGTAGTGGCCAGTGGGTTACCCACATCAGAAGATCTTGAAC
||| || |   | | ||    ||    ||  ||   ||    |      ||  ||||| | | | |      | |||  ||   |  || || | |||||| ||||||||||||||| ||||||||| |||  || || || ||| | || || || ||| |  | |||||||| || ||||||||||| |||   || |
gta-cattctttttctcttgtttctgatttatttaacattgaaatattgaacacttttatgttttattaagttgactgactcaactggttatat-ctcagACTTTGGAGCCATGGCTAGTCAGTGAAATAAAAATCTCAGGGGACCTCAAATTAATATCTATTCTTGCCAGTGGTTTGCCCACATCAGAGGATTCAGAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagggaaaaatgcttttgtttctcaacttactttcttggcatgtgatgttctcagAGTTTGGAGCCATGGCTTGTCAGTGAAGTAAGGATATCTGGAGACATAAAGTTGATCTCTGTAGTGGCCAGTGGGTTACCCACATCAGAAGATCTTGAAC
                        aacttac  putative branch site (score: 2)
                                              tgttctc  putative PPT
             ttttgttt  TA-rich tract