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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtggccagagttttcacttgtgtttacttgtgattagaaccatatattctgcttcaattgtgtcaattttttcttttacaattctttgatctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAACCGTAGGACTGTGAACCGGGCCTATGGAGGTGTTTTGTCGGGTGGTGCTG

Basic information

species Vitis vinifera
transcript Vv14s0108g00850.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0108g00850.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os08g06040.1 (Oryza sativa), 3'ss of exon 2
gtggccagagttttcacttgtgtttacttgtgattagaaccatatattctgcttcaattgtgtcaatttt-----ttcttttacaattctttgatctat-ctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAACCGTAGGACTGTGAACCGGGCCTATGGAGGTGTTTTGTCGGGTGGTGCTG
      |     || |  |  |||| |||   |   | | | ||   |    |   |   |  |||| |      |||||  | | ||  |||  |||  ||||||||||| ||||||||||||||||| ||||||||||| |||||| ||||||| || ||||| ||||||||  | || || |||||  |||| |||  ||| |
------aattggttgaaataagttttctttgaaccggtatcttaagcttcattgttaacattgcaatatccttggttcttacaaagttgcttgtgctaaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATCGCAGGACCGTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAG

upper sequence: Vv14s0108g00850.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os08g33920.1 (Oryza sativa), 3'ss of exon 2
gtggccagagttttcacttgtgtttacttgtgattagaaccatatattctgcttcaat---tgtgtcaattttttcttttaca-attctttgatctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAACCGTAGGACTGTGAACCGGGCCTATGGAGGTGTTTTGTCGGGTGGTGCTG
   |  |  ||||     |   | |    |  ||||      | ||| ||  |||| |   | | |  | ||     |||| | | | ||  || | ||| |||||||| ||| |||| |||||||| ||||||||||| || ||| | |||||||| ||||||||||||||  | ||||| || ||  | || ||   ||| |
---gataccgtttggttcttcatattaccgatattacttttctctatgctatttcactggatatttgtacttgaggatttatacagtgttctattt-tctccagATTCCCCACTTGAGGCCTGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAG

upper sequence: Vv14s0108g00850.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 2
gtggccagagttttca--cttgtgtttacttgtgattagaaccatatattctgcttcaattgtgtcaatttt-ttcttttacaattctt-tgatctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAACCGTAGGACTGTGAACCGGGCCTATGGAGGTGTTTTGTCGGGTGGTGCTG
     |||| |   ||  |||  |||| |     | || ||   | | |  |      | | | | | |  |  || |  | | ||| | || |  |  |||||||||| ||||||||||||||||| ||||||||||| || ||| |||||||||| ||||||||||||||  | ||||| |||||| |||| |||   || |
----tcagattaggcagtcttaagtttgcactgcagtataagtttgtgtcatttacataatatttaactgctgctcataaatatttcctatgcttcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAG

upper sequence: Vv14s0108g00850.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G152573_T04 (Zea mays), 3'ss of exon 2
gtggccagagttttca--cttgtgtttacttgtgattagaaccatatattctgcttcaattgtgtcaattttttcttttacaattctt---tgatctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAACCGTAGGACTGTGAACCGGGCCTATGGAGGTGTTTTGTCGGGTGGTGCTG
     |||| | | ||  |||  ||| ||  | || || ||   | |    |        ||| | || |  ||||  || |  ||     || |  |  |||||||||| ||||||||||||||||| ||||||||||| || ||| |||||||||  ||||||||||| ||  | ||||| |||||| |||| |||  ||| |
----tcagattatgcagtcttaagttcacgcgggagtataagtttgtgccattaacagcatgt-ttaactgattctcataaatatcgcgaatgcttgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCAAAGGACTGTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAG

upper sequence: Vv14s0108g00850.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G152552_T01 (Zea mays), 3'ss of exon 2
gtggccagagttttcacttgtgtttacttgtgattag--aaccatatattctgcttcaattgtgtc-aattttttcttttacaattctttgatctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAACCGTAGGACTGTGAACCGGGCCTATGGAGGTGTTTTGTCGGGTGGTGCTG
    || ||    |  | |  || |       | | |  |  ||| | |  |     | ||    | ||| || | |  | | ||| |||    ||| | ||||| |||||| |||| |||||||| ||||| ||||| || ||||| |||| ||| ||||||||||||||  | ||||| || ||  | || ||   |||||
--tacctgaacaatgccctcagtgtcaccaaaactgggtattcatctgtcattggatatttccacctaatattgtttaatgctattgtttc-catatttccagATCCCTCACTTGAGGCCTGCTGAGTACAAAAGGTCCAGGTTGCCTAGGAGCCGCAGGACTGTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTG

upper sequence: Vv14s0108g00850.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM5G820996_T01 (Zea mays), 3'ss of exon 2
-gtggcca-gagttttcacttgtgtttacttgtgattagaaccatatattctgcttcaattgtgtcaattttttcttttacaattctttgatctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAACCGTAGGACTGTGAACCGGGCCTATGGAGGTGTTTTGTCGGGTGGTGCTG
  |  |||  | |  ||| ||  ||| || ||   |   ||        ||||      |  |  || |   | ||  | | ||||||     |||||  |||| || ||| |||||||||| || ||||||||||| || ||| | |||||||| |||||||| |||||  | ||||| || ||  | || ||   |||||
actatccataaatcatcattta-gttcacatggtctggtaatttctctatctgaacaggtcttaacagtcaatgctaatgctattcttcc-catatctctagATCCCCCACTTGAGACCTGCCGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTTAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTG

upper sequence: Vv14s0108g00850.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G49340.1 (Glycine max), 3'ss of exon 2
gtggccagagttttcacttg---tgtttacttgtgattagaaccatatattc-tgcttcaattgtgtcaatt-ttttcttttacaattctttgatctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAACCGTAGGACTGTGAACCGGGCCTATGGAGGTGTTTTGTCGGGTGGTGCTG
    |   ||| || | ||    ||||||      ||     |||  || |  ||    || ||    || | |  |  ||| |   || |   |   |||||||||||| ||| | |||||||||||||||||||||||||||||||| |||||||| ||||| || ||||| ||||||||||||||||| || || || ||||
----cataagtgtttaattaacctgtttatcca-aatacaccccaagtagtgatgagcaaaatgccataactatcatgattttctgatcctgacttactctgcagATTCCACACTTAAGACCTGCTGAATACAAGAGGTCTAGATTGCCTAGGAACCGCAGGACCGTAAACCGAGCCTATGGAGGTGTTTTATCCGGGGGAGCTG

upper sequence: Vv14s0108g00850.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G37360.1 (Glycine max), 3'ss of exon 2
gtggccagagttttcacttgtgtttacttgtgattagaaccatatattctgcttcaattgtgtcaattttttcttttacaattctttgatctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAACCGTAGGACTGTGAACCGGGCCTATGGAGGTGTTTTGTCGGGTGGTGCTG
 |    |   | || |      |  |    | | |||        |||  ||   |    |   | | |  |  |||     || |   |  ||||||||||||| ||| ||||||||||||||||||||||||||||||||||  ||||||| ||||| || ||||| ||||| ||||||||||| || || || ||||
ttaattaagttgtttatccaaatacatccctaagtagtgatgagcattgagcaatatgccttgtattatcatgattttttgatcctgacttaatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACCGCAGGACCGTAAACCGAGCCTACGGAGGTGTTTTATCAGGAGGAGCTG

upper sequence: Vv14s0108g00850.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G28900.1 (Arabidopsis thaliana), 3'ss of exon 2
gtggccagagttttcacttgtgtttacttgtgattagaaccatatat-tctgcttcaattgtgtcaattttttcttttacaattctttgatcta---tctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAACCGTAGGACTGTGAACCGGGCCTATGGAGGTGTTTTGTCGGGTGGTGCTG
 |   || |   || |  |   |  |       | | || || ||   | |  || ||||       ||| ||    |  | ||  |   | |    |||||||||||| ||  ||||||||||||| ||||| ||||| || ||| ||||||||   ||||| ||||| || || ||||| |||||| | || || | |||||
ttactcatatgcttaatctcaatagaacc----tcaaaaacacattcctttttttgaattagcatggtttcttaagctttactttctatgtttgttttctgcagATTCCGCATTTGAGACCTGCTGAGTACAAAAGGTCAAGGTTGGCAAGGAACGAGAGGACAGTGAATCGTGCATATGGTGGTGTTCTATCTGGAGTTGCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110426349|gb|EC992755.1|EC992755
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110401727|gb|EC968344.1|EC968344
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|351029961|gb|FQ430703.1|FQ430703
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|71867924|gb|DT016979.1|DT016979
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|71875778|gb|DT024833.1|DT024833
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110696892|gb|EE073402.1|EE073402
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|33402492|gb|CF208119.1|CF208119
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|27582431|gb|CB005126.1|CB005126
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110704730|gb|EE081740.1|EE081740
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110694427|gb|EE071525.1|EE071525
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110376594|gb|EC941653.1|EC941653
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|34544378|gb|CF512610.1|CF512610
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|34545525|gb|CF513757.1|CF513757
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCCCCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110399562|gb|EC966073.1|EC966073
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110689386|gb|EE065575.1|EE065575
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110693670|gb|EE070103.1|EE070103
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|30296475|gb|CB973269.1|CB973269
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110402092|gb|EC968725.1|EC968725
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|71872787|gb|DT021842.1|DT021842
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110728053|gb|EE103286.1|EE103286
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110375579|gb|EC940580.1|EC940580
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|71871640|gb|DT020695.1|DT020695
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|30130884|gb|CB916223.1|CB916223
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110404494|gb|EC969640.1|EC969640
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110691699|gb|EE070097.1|EE070097
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110702167|gb|EE080571.1|EE080571
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110361458|gb|EC924931.1|EC924931
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|34545438|gb|CF513670.1|CF513670
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110387708|gb|EC952399.1|EC952399
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|71857004|gb|DT006059.1|DT006059
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|71857314|gb|DT006369.1|DT006369
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110384235|gb|EC948660.1|EC948660
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110397100|gb|EC962821.1|EC962821
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110699945|gb|EE077421.1|EE077421
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110376077|gb|EC941118.1|EC941118
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|34549520|gb|CF517752.1|CF517752
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|87585832|gb|DY474387.1|DY474387
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
EST: gi|110413639|gb|EC979436.1|EC979436
EST:     AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGG                         ATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC
genomic: AGAGGGCCAATGGTCCCAAATGCCCAGTTACTGGGAAGAGAATCCAAGGGgtatgccttt ... ctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctgcttcaattgtgtcaattttttcttttacaattctttgatctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAACCGTAGGACTGTGAACCGGGCCTATGGAGGTGTTTTGTCGGGTGGTGCTG
                                      ctttgat  putative branch site (score: 5)
                                            tctatct  CT-rich tract
                   aattttttcttttaca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtggccagagttttcacttgtgtttacttgtgattagaaccatatattctgcttcaattgtgtcaattttttcttttacaattctttgatctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAACCGTAGGACTGTGAACCGGGCCTATGGAGGTGTTTTGTCGGGTGGTGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - cacttgt
- - - - - - - - - - - - - - - - - -agaacca
- - - - - - - - - - - - - - - - - - - - - - - - ctgcttc