1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgagccctacgatttgtgcttctgttcttgatattttgaccaaaatcaatagtgattagttcactgaaggccgttcttcttatgcattcatttgtttcagAATGATACAACGAATTTCGGTGCCATTGTTGGACGAGTGGCTAATAGGATTGGAGGCGCACAATTTACATTGAACGGAACCCACTATAAGCTAGTTGCTA
species | Vitis vinifera |
transcript | Vv14s0108g00270.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAGCTAAGGAGTACAAG AATGATACAACGAATTTCGGTGCCATTGTTGGACGAGTGGCTAATAGGATTEST: gi|161709120|gb|FC058392.1|FC058392
genomic: GGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAGgtgtgaaatt ... tttgtttcagAATGATACAACGAATTTCGGTGCCATTGTTGGACGAGTGGCTAATAGGATT
EST: GGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAG AATGATACAACGAATTTCGGTGCCATTGTTGGACGAGTGGCTAATAGGATTEST: gi|110693694|gb|EE070148.1|EE070148
genomic: GGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAGgtgtgaaatt ... tttgtttcagAATGATACAACGAATTTCGGTGCCATTGTTGGACGAGTGGCTAATAGGATT
EST: GGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAG AATGATACAACGAATTTCGGTGCCATTGTTGGACGAGTGGCTAATAGGATTEST: gi|161709859|gb|FC058919.1|FC058919
genomic: GGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAGgtgtgaaatt ... tttgtttcagAATGATACAACGAATTTCGGTGCCATTGTTGGACGAGTGGCTAATAGGATT
EST: GGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAT AATGATACAACGAATTTCGGTGCCATTGTTGGACGAATGGCTAATAGGATT
genomic: GGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAGgtgtgaaatt ... tttgtttcagAATGATACAACGAATTTCGGTGCCATTGTTGGACGAGTGGCTAATAGGATT
tcaatagtgattagttcactgaaggccgttcttcttatgcattcatttgtttcagAATGATACAACGAATTTCGGTGCCATTGTTGGACGAGTGGCTAATAGGATTGGAGGCGCACAATTTACATTGAACGGAACCCACTATAAGCTAGTTGCTA
tttgtttc CT-rich tract
attcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagccctacgatttgtgcttctgttcttgatattttgaccaaaatcaatagtgattagttcactgaaggccgttcttcttatgcattcatttgtttcagAATGATACAACGAATTTCGGTGCCATTGTTGGACGAGTGGCTAATAGGATTGGAGGCGCACAATTTACATTGAACGGAACCCACTATAAGCTAGTTGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - ccctacg
- - - - - - tttgtgc
- - - - - - - - - - - - - - - - - - - - - aaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcattca