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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgatttcttttaggtgctactgtggattgtaatgagatgggaactccctttcggccatggctctcatatgtgttcaccccttgtagATTGGGATCTTCTGCTTGCCTCCATCGGGTGTCATTCCGCTTCATAATCATCCTGGAATGACGGTTTTCAGTAAACTTCTCTTCGGGTCTATGCACATCA

Basic information

species Vitis vinifera
transcript Vv14s0108g00090.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0108g00090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G05230.1 (Glycine max), 3'ss of exon 2
----------------gtgagttgatttcttttaggtgctactgtggattgtaatgagatgggaactccctttcggccatggctctcatatgtgttcaccccttgtagATTGGGATCTTCTGCTTGCCTCCATCGGGTGTCATTCCGCTTCATAATCATCCTGGAATGACGGTTTTCAGTAAACTTCTCTTCGGGTCTATGCACATCA
                   |  |||||||     |||||     || ||   | |||| ||     |   ||  |   ||  |  |  | | |  |          |||| ||||| || || ||||| || || || |||||||| ||||| ||||| ||||||||||||||||||||||| || || || ||  ||||||||||||
gtacttactctaaccttgaaactgatttcac---ggtgcatgcatgcatgagactgag-tgctgtttttgttgtgattataaccttgttttattgttgtgttgcacagATGGGGATATTTTGTTTGCCACCTTCTGGGGTCATTCCTCTTCACAATCACCCTGGAATGACGGTTTTCAGTAAGCTACTTTTTGGCACTATGCACATCA

upper sequence: Vv14s0108g00090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G37490.2 (Glycine max), 3'ss of exon 2
------------------gtgagttgatttcttttag-----gtgctactg---tggattgtaatgagatgggaactccctttcggccatggctctcatat-gtgttcaccccttgtagATTGGGATCTTCTGCTTGCCTCCATCGGGTGTCATTCCGCTTCATAATCATCCTGGAATGACGGTTTTCAGTAAACTTCTCTTCGGGTCTATGCACATCA
                   | | ||| |||||   ||     ||| |  |    | | |||   ||  | || ||||   ||||    ||   | |  | |  | || |    ||| |||| || || || |||||||| || |  || || ||||| ||||| ||||| ||||||||||||||||||||||| ||||| || ||  | ||||||||||
gtaattaagctatgacttataaattgctttctcgcagtgctagtgttgtttaatttgtttggtgtgtaagggtaactttatttc--ttataattttattgttatttttatgtgttgaagATGGGAATATTTTGCTTGCCACCTTGTGGAGTTATTCCTCTTCACAATCACCCTGGAATGACGGTTTTCAGTAAGCTTCTGTTTGGAACCATGCACATCA

upper sequence: Vv14s0108g00090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G02430.1 (Glycine max), 3'ss of exon 2
---------gtgagttgatttcttttaggtgctactgtggattgtaatgagatgggaactccctttcggccatggctctcatatgtgttcaccccttgt--agATTGGGATCTTCTGCTTGCCTCCATCGGGTGTCATTCCGCTTCATAATCATCCTGGAATGACGGTTTTCAGTAAACTTCTCTTCGGGTCTATGCACATCA
          |     |  ||    | |||||     || ||    |||||| | ||   |  |||  |   ||  | | |  | ||||      |||   |||| ||||| || || ||||| || || || ||||| || ||||| ||||| ||||||||||||||||||||||| || || || ||  ||||||||||||
gctttcactcttgaccggctttgggtgggtgcatgcatgcatgc--atgaga-gtgagtgctgtttttgtggtgattgtaacctttgttgttgtgttgcacagATGGGGATATTTTGTTTGCCACCTTCTGGGGTCATCCCTCTTCACAATCACCCTGGAATGACGGTTTTCAGTAAGCTACTTTTTGGCACTATGCACATCA

upper sequence: Vv14s0108g00090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G49130.1 (Glycine max), 3'ss of exon 2
-------------------------------------------------gtgagttgatttctttta--ggtgctactgtggattgtaatgagatgggaactccctttcggccatggctctcatatgtgttcaccccttgtagATTGGGATCTTCTGCTTGCCTCCATCGGGTGTCATTCCGCTTCATAATCATCCTGGAATGACGGTTTTCAGTAAACTTCTCTTCGGGTCTATGCACATCA
                                                 ||   ||  ||| |||||  ||||     | | |   | ||    |   |  |   | |     ||   | | || | | || |  | ||| |||| || || || |||||||| || || || || ||||| ||||| ||||| ||||||||||||||||| ||||| ||||| || ||  | ||||||||||
gtaactaagctatgacctataaattgctttcttgcagtgctatactggtgtcgtttattttgttttattggtgtgtaagagtaactttatttcttataattttgttattatttattattattat-tat-tttatgcgttgaagATGGGAATATTTTGCTTGCCACCTTCTGGAGTTATTCCTCTTCACAATCACCCTGGAATGACGGTTTTTAGTAAGCTTCTTTTTGGAACCATGCACATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgagatgggaactccctttcggccatggctctcatatgtgttcaccccttgtagATTGGGATCTTCTGCTTGCCTCCATCGGGTGTCATTCCGCTTCATAATCATCCTGGAATGACGGTTTTCAGTAAACTTCTCTTCGGGTCTATGCACATCA
                                         ttcacccctt  CT-rich tract