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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actgtatagccttctgtttcagagttgcaccatgtttctattccaatttcaactctcctgtggtttatgattattcatttagtttagttgtcttcagcagAGCAGCTATAGGGAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAG

Basic information

species Vitis vinifera
transcript Vv14s0083g01050.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33402815|gb|CF208442.1|CF208442
EST:     AATGCAGTTATGGTGCAGTGGAAGTCAGCCGACCCTCCAAGGAGCTTGAG                         AGCAGCTATAGGGAGTACTTGAAACTGAAATCTAAGTTTGAGGCCCTTCAA
genomic: AATGCAGTTATGGTGCAGTGGAAGTCAGCCGACCCTCCAAGGAGCTTGAGgtggtttaat ... tcttcagcagAGCAGCTATAGGGAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAA
EST: gi|33405261|gb|CF210888.1|CF210888
EST:     AATGCAGTTATGGTGCAGTGGAAGTCAGCCGACCCTCCAAGGAGCTTGAGCAG                       
genomic: AATGCAGTTATGGTGCAGTGGAAGTCAGCCGACCCTCCAAGGAGCTT--G-AGgtggtttaat ... tcttcagc
EST: gi|33402901|gb|CF208528.1|CF208528
EST:     AATGCAGTTATGGTGCAGTGGAAGTCAGCCGACCCTCCAAGGAGCTTGAG                         AGCAGCTATAGGGAGTACTTGAAACTGAAATCTAAGTTTGAGGCCCTTCAA
genomic: AATGCAGTTATGGTGCAGTGGAAGTCAGCCGACCCTCCAAGGAGCTTGAGgtggtttaat ... tcttcagcagAGCAGCTATAGGGAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAA
EST: gi|110370316|gb|EC929381.1|EC929381
EST:     ATGCAGTTAT-GTNGCAGTGGAAGTCAGCCGACCCTCCAAGGAGCTTGAG                         AGCAGCTATAGGGAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAA
genomic: ATGCAGTTATGGT-GCAGTGGAAGTCAGCCGACCCTCCAAGGAGCTTGAGgtggtttaat ... tcttcagcagAGCAGCTATAGGGAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAA
EST: gi|110710966|gb|EE087623.1|EE087623
EST:     AATGCAGTTATGGTGCAGTGGAAGTCAGCCGACCCTCCAAGGAGCTTGAG                         AGCAGCTATAGGGAGTACTTGAAACTGAAATCTAAGTTTGAGGCCCTTCAA
genomic: AATGCAGTTATGGTGCAGTGGAAGTCAGCCGACCCTCCAAGGAGCTTGAGgtggtttaat ... tcttcagcagAGCAGCTATAGGGAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAA
EST: gi|110398751|gb|EC965225.1|EC965225
EST:     AATGCAGTTATGGTGCAGTGGAAGTCAGCCGACCCTCCAAGGAGCTTGAG                         AGCAGCTATAGGGAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAA
genomic: AATGCAGTTATGGTGCAGTGGAAGTCAGCCGACCCTCCAAGGAGCTTGAGgtggtttaat ... tcttcagcagAGCAGCTATAGGGAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttcaactctcctgtggtttatgattattcatttagtttagttgtcttcagcagAGCAGCTATAGGGAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAG
                                          ttgtcttc  CT-rich tract
                  tttatgattattcatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actgtatagccttctgtttcagagttgcaccatgtttctattccaatttcaactctcctgtggtttatgattattcatttagtttagttgtcttcagcagAGCAGCTATAGGGAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAG

- - - -agccttc
- - - - - - - - - - - - - - -ccatgtt