1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtatgcatttattcaaattatagtgagtttaccttctagtattctttttgatttaactccaaccttctcttctttgtttctgtctcttatctctttgtagTATACATCATTATTTCGAAGAGGGGAAGTGAATTCCATCCCATCATCCATTCAGGGGGCGGCTTCTTTGAGTTCCACTACATCCCTTGATGACTCTTTAT
species | Vitis vinifera |
transcript | Vv14s0083g01000.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATAGGAACTGTACGTGCCTCAGTTGCTTTGTTCAGAACTTCTTGAATGTG TATACATCATTATTTCGAAGAGGGGAAGTGAATTCCATCCCATCATCCATTEST: gi|161708729|gb|FC060872.1|FC060872
genomic: ATAGGAACTGTATGTGCCTCAGTTGCTTTGTTCAGAACTTCTTGAATGTGgtatatttca ... ctctttgtagTATACATCATTATTTCGAAGAGGGGAAGTGAATTCCATCCCATCATCCATT
EST: AGGAACTGTATGTGCCTCAGTTGCTTTGTTCCGAACTTCTTGAATGTG TATACATCATTATTTCGAAGAGGGGAAGTGAATTCCATCCCATCATCCATT
genomic: AGGAACTGTATGTGCCTCAGTTGCTTTGTTCAGAACTTCTTGAATGTGgtatatttca ... ctctttgtagTATACATCATTATTTCGAAGAGGGGAAGTGAATTCCATCCCATCATCCATT
ttttgatttaactccaaccttctcttctttgtttctgtctcttatctctttgtagTATACATCATTATTTCGAAGAGGGGAAGTGAATTCCATCCCATCATCCATTCAGGGGGCGGCTTCTTTGAGTTCCACTACATCCCTTGATGACTCTTTAT
atttaac putative branch site (score: 3)
ctccaaccttctcttc CT-rich tract
atttaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcatttattcaaattatagtgagtttaccttctagtattctttttgatttaactccaaccttctcttctttgtttctgtctcttatctctttgtagTATACATCATTATTTCGAAGAGGGGAAGTGAATTCCATCCCATCATCCATTCAGGGGGCGGCTTCTTTGAGTTCCACTACATCCCTTGATGACTCTTTAT
gtatgca
- - - - - - -caaatta
- - - - - - - - - - - - - - - -ccttcta